DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017211
GenePtpra
SynonymsPTP[a]
Ptpa
PTPalpha
RPTPalpha
RPTRalpha
Desc.protein tyrosine phosphatase, receptor type, A
LocusNM_008980 chr2:130276014-130380036(+)
NM_001163688 chr2:130276014-130380036(+)
DB links


Entrez 19262
MGI 97808
Ensembl ENSMUSG00000027303
Vega OTTMUSG00000015498
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017717
(v2.0)
PtpraNM_001163688,NM_00898019262
29.754425.31131.54867.889448.403527.5457731.938430.76529.598467.44529
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017211
(v1.0)
Ptpra19262
Minor ZGA0.97325
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017717
(v2.0)
Ptpra19262
690/4670.0503422/467-0.2618112/4671.517317/4670.769180/467-0.4824516/467-0.4543
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017717
(v2.0)
Ptpra19262
345/2170.1554179/217-0.3919103/2172.4615304/2171.805844/217-0.2393351/2170.094
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017717
(v2.0)
Ptpra19262
38.953811733.29
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017717
(v2.0)
Ptpra19262
8.85268110.93
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017211
(v1.0)
PtpraNM_001163688,NM_00898019262
26.307921.82885.875395.8431722.5831
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017211
(v1.0)
PtpraNM_001163688,NM_00898019262
170.496149.60539.053344.5944179.563
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017211
(v1.0)
PtpraNM_001163688,NM_00898019262
27.507410.881523.8157
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017211
(v1.0)
PtpraNM_001163688,NM_00898019262
26.849921.609622.7638
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017211
(v1.0)
PtpraNM_001163688,NM_00898019262
165.982281.156
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017211
(v1.0)
PtpraNM_001163688,NM_00898019262
27.523410.732524.9666
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017211
(v1.0)
PtpraNM_001163688,NM_00898019262
5.43975.641826.65723
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017211
(v1.0)
PtpraNM_001163688,NM_00898019262
87.9534104.428
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017211
(v1.0)
PtpraNM_001163688,NM_00898019262
5.527116.14663
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017211
(v1.0)
PtpraNM_001163688,NM_00898019262
2.285352.52213
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017211
(v1.0)
2423C0322A08-3Mm.587Ptpra19262
U002478NAP006988-001Ptpra;TC876860,TC842603P18052U,F,23.38693.52133.23753.30463.09723.48983.8011
0017211
(v1.0)
13611J0059F01-3Mm.587Ptpra19262
U002478NAP006988-001Ptpra;TC842608,TC842603P18052U,F,22.60872.34462.44752.28922.41432.47342.5904
0017211
(v1.0)
17106K0534F04-3Mm.217294U002478NAP033334-1Ptpra;TC842606P18052U,F,22.65662.65172.59582.56093.00172.75522.7287
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017211
(v1.0)
1425340_a_atMm.224246PtpraNM_008980.2,NM_001163688.119262
00195.9750316.95
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017211
(v1.0)
A_51_P382194PtpraNM_00898019262
11P0.9470.685P
Proteome N/A