DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017310
GeneRab1
SynonymsGtbp
Rab-1
Rab1A
ras-related YPT1 protein
Ypt1
Desc.RAB1, member RAS oncogene family
LocusNM_008996 chr11:20101605-20126859(+)
DB links


Entrez 19324
MGI 97842
Ensembl ENSMUSG00000020149
Vega OTTMUSG00000005223
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017820
(v2.0)
Rab1NM_00899619324
62.742710.15646.165847.339268.396295.552566.50275.125180.7498102.493
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017310
(v1.0)
Rab119324
MGA0.98096
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017820
(v2.0)
Rab119324
694/3800.3553456/3800.1465214/3802.7341492/3801.697457/380-0.6698312/380-0.8806
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017820
(v2.0)
Rab119324
352/1470.743216/1470.4365204/1473.9664450/1472.924113/147-1.374861/147-1.8427
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017820
(v2.0)
Rab119324
50.913310847.14
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017820
(v2.0)
Rab119324
14.3067020.44
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017310
(v1.0)
Rab1NM_00899619324
10.55654.2436235.245247.539346.8456
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017310
(v1.0)
Rab1NM_00899619324
133.713104.573613.377754.913435.238
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017310
(v1.0)
Rab1NM_00899619324
11.037822.94564.62988
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017310
(v1.0)
Rab1NM_00899619324
10.77394.201013.79747
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017310
(v1.0)
Rab1NM_00899619324
11.877710.7985
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017310
(v1.0)
Rab1NM_00899619324
11.044222.63144.16494
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017310
(v1.0)
Rab1NM_00899619324
32.631545.901155.6672
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017310
(v1.0)
Rab1NM_00899619324
70.808668.6921
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017310
(v1.0)
Rab1NM_00899619324
21.378330.7156
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017310
(v1.0)
Rab1NM_00899619324
1.023720.946377
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017310
(v1.0)
5543H3002E05-3Mm.14530Rab119324
U012352NAP122176-001Rab1;TC835696P11476U,F,23.10243.18813.54143.76633.91094.16054.1874
0017310
(v1.0)
18109L0062F03-3Mm.14530Rab119324
U032552NAP123714-1U,F,22.98242.82352.43122.23982.43652.26142.4205
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017310
(v1.0)
1416082_atMm.271944Rab1NM_008996.319324
1012.15226.5251879.453068.2753266.625
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017310
(v1.0)
A_51_P326023Rab1NM_00899619324
11P0.7020.193P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017310
(v1.0)
Rab119324
45.54821.516