DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017354
GeneRab3d
Synonyms
Desc.RAB3D, member RAS oncogene family
LocusNM_031874 chr9:21711955-21722565(-)
DB links


Entrez 19340
MGI 97844
Ensembl ENSMUSG00000019066
Vega OTTMUSG00000031911
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017869
(v2.0)
Rab3dNM_03187419340
10.533484.5684151.07230.99417.145342.249653.97749171.4918.214242.50074
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017354
(v1.0)
Rab3d19340
Minor ZGA0.99536
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017869
(v2.0)
Rab3d19340
727/4790.0889424/479-0.2915407/4793.3335951/4792.314799/479-0.2147718/479-0.0154
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017869
(v2.0)
Rab3d19340
305/1740.2954204/1740.1127381/1744.6383838/1743.580264/1740.6031368/1740.4789
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017869
(v2.0)
Rab3d19340
116.433316869.31
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017869
(v2.0)
Rab3d19340
14.52146123.81
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017354
(v1.0)
Rab3dNM_03187419340
87.9356104.88623.09354.948542.79523
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017354
(v1.0)
Rab3dNM_03187419340
374.017497.965110.1633.49179.73466
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017354
(v1.0)
Rab3dNM_03187419340
91.94483.85219114.433
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017354
(v1.0)
Rab3dNM_03187419340
89.7472103.833127.125
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017354
(v1.0)
Rab3dNM_03187419340
281.234449.652
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017354
(v1.0)
Rab3dNM_03187419340
91.99823.79942139.427
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017354
(v1.0)
Rab3dNM_03187419340
21.3814.778015.70585
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017354
(v1.0)
Rab3dNM_03187419340
33.307727.4738
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017354
(v1.0)
Rab3dNM_03187419340
26.2628.20324
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017354
(v1.0)
Rab3dNM_03187419340
77.512979.7532
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017354
(v1.0)
13169H3159C05-3Rab3d19340
U030593NAP004795-002Rab3d;TC825406,TC825404P35276U,F,24.26624.26844.45064.17244.10724.1644.0305
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017354
(v1.0)
1449259_atMm.260157Rab3dNM_031874.419340
142.80000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017354
(v1.0)
A_52_P432919Rab3dNM_03187419340
11P1.3740.194P
0017354
(v1.0)
A_52_P451389Rab3dNM_03187419340
11P0.7540.217P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017354
(v1.0)
Rab3d19340
43228165