DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017355
GeneRab3gap1
Synonymsp130
Desc.RAB3 GTPase activating protein subunit 1
LocusNM_178690 chr1:129765350-129840453(+)
DB links


Entrez 226407
MGI 2445001
Ensembl ENSMUSG00000036104
Vega OTTMUSG00000025233
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017870
(v2.0)
Rab3gap1NM_178690226407
10.519856.315470.37469.464768.424364.914239.6775168.78629.452114.14051
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017355
(v1.0)
Rab3gap1226407
Maternal RNA0.9646
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017870
(v2.0)
Rab3gap1226407
488/363-0.0857402/3630.0309113/3631.8827318/3631.134936/363-1.253252/363-1.1212
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017870
(v2.0)
Rab3gap1226407
264/1650.1643184/1650.0408107/1652.8873312/1652.233119/165-1.0226103/165-1.2668
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017870
(v2.0)
Rab3gap1226407
47.95549451.02
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017870
(v2.0)
Rab3gap1226407
22.62746733.77
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017355
(v1.0)
Rab3gap1NM_178690226407
58.525948.90627.049865.845456.78982
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017355
(v1.0)
Rab3gap1NM_178690226407
287.306226.69635.294831.438135.9345
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017355
(v1.0)
Rab3gap1NM_178690226407
61.19423.8471953.3577
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017355
(v1.0)
Rab3gap1NM_178690226407
59.731648.415150.9237
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017355
(v1.0)
Rab3gap1NM_178690226407
527.807475.817
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017355
(v1.0)
Rab3gap1NM_178690226407
61.22983.794555.8514
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017355
(v1.0)
Rab3gap1NM_178690226407
6.527075.644026.57757
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017355
(v1.0)
Rab3gap1NM_178690226407
46.099427.3718
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017355
(v1.0)
Rab3gap1NM_178690226407
92.62772.39148
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017355
(v1.0)
Rab3gap1NM_178690226407
10.39618.28637
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017355
(v1.0)
5939H3013B07-3Mm.286294732493F09Rik226407
U000756NAP004491-001TC794168U,F,22.83612.97922.81842.652.12532.4212.3238
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017355
(v1.0)
1455922_atMm.476343Rab3gap1NM_178690.4226407
3098.54452.451087.95363441.5
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017355
(v1.0)
Rab3gap1226407
61176137