DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017369
GeneRab6a
SynonymsRab6
Desc.RAB6A, member RAS oncogene family
LocusNM_024287 chr7:107756100-107789782(+)
NM_001163663 chr7:107756100-107789782(+)
DB links


Entrez 19346
MGI 894313
Ensembl ENSMUSG00000030704
Vega OTTMUSG00000016494
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017884
(v2.0)
Rab6aNM_001163663,NM_02428719346
14.175545.513151.142636.379221.502233.862824.298440.650423.137734.4021
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017369
(v1.0)
Rab619346
Maternal RNA0.97836
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017884
(v2.0)
Rab6a19346
666/3200.5432495/3200.5118164/3202.5918395/3201.627487/3200.1766440/320-0.1395
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017884
(v2.0)
Rab6a19346
394/1520.8571249/1520.5927163/1523.5999378/1522.625724/152-0.5853117/152-0.9678
SPR_Methy_Kobayashi_+-5KfromTSS N/A
SPR_Methy_Kobayashi_+-2KfromTSS N/A
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017369
(v1.0)
Rab6NM_001163663,NM_02428719346
47.292635.235627.065614.930617.1228
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017369
(v1.0)
Rab6NM_001163663,NM_02428719346
80.465648.491339.211855.069224.4404
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017369
(v1.0)
Rab6NM_001163663,NM_02428719346
49.44875.1841138.4429
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017369
(v1.0)
Rab6NM_001163663,NM_02428719346
48.266834.881830.1157
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017369
(v1.0)
Rab6NM_001163663,NM_02428719346
566.202260.105
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017369
(v1.0)
Rab6NM_001163663,NM_02428719346
49.47745.113133.0299
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017369
(v1.0)
Rab6NM_001163663,NM_02428719346
25.058514.416116.0072
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017369
(v1.0)
Rab6NM_001163663,NM_02428719346
153.53569.4324
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017369
(v1.0)
Rab6NM_001163663,NM_02428719346
58.54266.6747
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017369
(v1.0)
Rab6NM_001163663,NM_02428719346
54.283.6819
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017369
(v1.0)
2808C0404C06-3Mm.28650Rab619346
U008458NAP099432-001Rab6;TC891784P35279U,F,24.32114.31763.40273.4923.51553.53583.7178
0017369
(v1.0)
12037H3131E06-3Mm.28650Rab619346
U008458NAP099432-001TC891784,TC816203P35279U,F,24.07073.94943.74123.68423.88533.76573.9982
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017369
(v1.0)
1448304_a_atMm.28650Rab6NM_001163663.1,NM_024287.419346
406.9918.9510.75187.625284.4
0017369
(v1.0)
1447776_x_atMm.28650Rab6NM_001163663.1,NM_024287.419346
1086.2253286.951729.4615.71017.6
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017369
(v1.0)
A_51_P209873Rab6NM_02428719346
11P0.950.735P
0017369
(v1.0)
A_52_P87853Rab6NM_02428719346
11P0.9160.542P
Proteome N/A