DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017396
GeneRad17
SynonymsMmRad24
Desc.RAD17 homolog (S. pombe)
LocusNM_011233 chr13:101387119-101421014(-)
NM_001044371 chr13:101387119-101421014(-)
DB links


Entrez 19356
MGI 1333807
Ensembl ENSMUSG00000021635
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017909
(v2.0)
Rad17NM_001044371,NM_001283011,NM_01123319356
5.6633315.889130.740463.221435.921611.71659.3461421.769133.244312.6841
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017396
(v1.0)
Rad1719356
2-Cell Transient0.9803
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017909
(v2.0)
Rad1719356
596/3070.443437/3070.3921472/3074.16871052/3073.09776/307-3.416470/307-2.706
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017909
(v2.0)
Rad1719356
369/1420.8604247/1420.6786458/1425.17541031/1424.16742/142-3.548743/142-2.283
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017909
(v2.0)
Rad1719356
57.456712346.71
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017909
(v2.0)
Rad1719356
9.17577112.92
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017396
(v1.0)
Rad17NM_001044371,NM_01123319356
16.521521.222447.100524.91636.65978
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017396
(v1.0)
Rad17NM_001044371,NM_01123319356
149.519209.286456.371221.25971.0374
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017396
(v1.0)
Rad17NM_001044371,NM_01123319356
17.27472.0727923.1541
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017396
(v1.0)
Rad17NM_001044371,NM_01123319356
16.861821.009316.106
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017396
(v1.0)
Rad17NM_001044371,NM_01123319356
101.285117.329
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017396
(v1.0)
Rad17NM_001044371,NM_01123319356
17.28472.044417.6645
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017396
(v1.0)
Rad17NM_001044371,NM_01123319356
43.607724.057723.0163
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017396
(v1.0)
Rad17NM_001044371,NM_01123319356
188.806168.344
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017396
(v1.0)
Rad17NM_001044371,NM_01123319356
7.0519938.5329
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017396
(v1.0)
Rad17NM_001044371,NM_01123319356
13.978713.8456
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017396
(v1.0)
4694C0948F06-3Mm.20947Rad1719356
U035112NAP009888-001Rad17;TC936238O88934U,F,23.61883.59693.4673.70792.99723.20143.0327
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017396
(v1.0)
1448762_atMm.248489Rad17NM_011233.2,NM_001044371.119356
396.75404.5751013.575359.85304.5
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017396
(v1.0)
A_51_P464630Rad17NM_01123319356
11P0.560.114P
0017396
(v1.0)
A_51_P464633Rad17NM_01123319356
11P0.6980.188P
Proteome N/A