DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017453
GeneRap1a
SynonymsKrev-1
Rap1
Desc.RAS-related protein-1a
LocusNM_145541 chr3:105531200-105604254(-)
DB links


Entrez 109905
MGI 97852
Ensembl ENSMUSG00000068798
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017966
(v2.0)
Rap1aNM_145541109905
18.741831.887464.44646.617359.312516.547722.738729.276643.425817.4425
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017453
(v1.0)
Rap1a109905
Minor ZGA0.98441
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017966
(v2.0)
Rap1a109905
617/441-0.0283406/441-0.2349142/4411.9371616/4411.807627/441-1.933232/441-1.5199
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017966
(v2.0)
Rap1a109905
272/1720.1476174/172-0.0989120/1722.9953426/1722.62223/172-3.40360/172-2.0911
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017966
(v2.0)
Rap1a109905
63.958112252.42
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017966
(v2.0)
Rap1a109905
10.05956415.72
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017453
(v1.0)
Rap1aNM_145541109905
62.253882.78265.103971.40727.5225
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017453
(v1.0)
Rap1aNM_145541109905
14.219422.15515.957316.57076.20015
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017453
(v1.0)
Rap1aNM_145541109905
65.09211.622790.317
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017453
(v1.0)
Rap1aNM_145541109905
63.536281.950840.3405
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017453
(v1.0)
Rap1aNM_145541109905
22.50228.50293
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017453
(v1.0)
Rap1aNM_145541109905
65.129811.463544.244
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017453
(v1.0)
Rap1aNM_145541109905
60.27668.946352.5422
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017453
(v1.0)
Rap1aNM_145541109905
16.391615.4578
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017453
(v1.0)
Rap1aNM_145541109905
55.6185196.548
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017453
(v1.0)
Rap1aNM_145541109905
51.223399.952
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017453
(v1.0)
8409H3065D10-3Rap1a109905
U041409NAP098538-001Rap1a;TC881270U,F,24.55674.52823.57163.70684.17064.14984.011
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017453
(v1.0)
1424139_atMm.458171Rap1aNM_145541.4109905
12072037.21140.5752076.61021.125
0017453
(v1.0)
1448020_atMm.458171Rap1aNM_145541.4109905
000218.25114.775
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017453
(v1.0)
A_51_P228632Rap1aNM_145541109905
11P0.680.161P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017453
(v1.0)
Rap1a109905
022052