DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017466
GeneRapgef6
SynonymsPDZ-GEF2
Pdzgef2
RA-GEF-2
Desc.Rap guanine nucleotide exchange factor (GEF) 6
LocusNM_001252494 chr11:54336347-54512788(+)
NM_001252496 chr11:54336347-54512788(+)
NM_175258 chr11:54336347-54512788(+)
NM_001252498 chr11:54409648-54452366(+)
NM_001252497 chr11:54409648-54462966(+)
DB links


Entrez 192786
MGI 2384761
Ensembl ENSMUSG00000037533
Vega OTTMUSG00000005672
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017979
(v2.0)
Rapgef6NM_001252494,NM_001252496,NM_001252497,NM_001252498,NM_175258192786
8.364148.7927613.524818.395814.43863.8842315.562210.287814.3983.34454
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017466
(v1.0)
Rapgef6192786
2-Cell Transient0.88786
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017979
(v2.0)
Rapgef6192786
666/3580.3818566/3580.5434714/3584.5512776/3584.276721/358-1.983378/358-2.774
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017979
(v2.0)
Rapgef6192786
342/1930.3111266/1930.345602/1935.15671946/1934.64729/193-2.243534/193-3.0489
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017979
(v2.0)
Rapgef6192786
27.139611224.23
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017979
(v2.0)
Rapgef6192786
8.8434939.51
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017466
(v1.0)
Rapgef6NM_175258192786
9.065529.3331813.38129.7913610.3256
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017466
(v1.0)
Rapgef6NM_175258192786
51.135846.06949.400951.707649.6672
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017466
(v1.0)
Rapgef6NM_175258192786
9.478833.0600210.1827
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017466
(v1.0)
Rapgef6NM_175258192786
9.252289.239477.62486
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017466
(v1.0)
Rapgef6NM_175258192786
49.697424.8212
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017466
(v1.0)
Rapgef6NM_175258192786
9.484343.018118.36269
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017466
(v1.0)
Rapgef6NM_175258192786
12.38899.453949.70813
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017466
(v1.0)
Rapgef6NM_175258192786
33.239543.9599
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017466
(v1.0)
Rapgef6NM_175258192786
4.44567.69891
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017466
(v1.0)
Rapgef6NM_175258192786
1.442061.549
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017466
(v1.0)
1427412_s_atMm.254404Rapgef6NM_175258.3192786
78.925091.67500
0017466
(v1.0)
1443877_a_atMm.254404Rapgef6NM_175258.3192786
180.075228.75142.45205172.9
0017466
(v1.0)
1434509_atMm.254404Rapgef6NM_175258.3192786
0688.425580.8500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017466
(v1.0)
A_51_P254757Rapgef6AK220459192786
11P1.860.106P
0017466
(v1.0)
A_51_P407209Rapgef6AK220459192786
11P0.03620.0348P
Proteome N/A