DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017917
GeneRnf170
Synonyms
Desc.ring finger protein 170
LocusNM_029965 chr8:27229852-27254341(+)
DB links


Entrez 77733
MGI 1924983
Ensembl ENSMUSG00000013878
Vega OTTMUSG00000023970
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018444
(v2.0)
Rnf170NM_02996577733
4.2448717.441818.601715.485.286019.842724.9587311.68875.153799.31607
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017917
(v1.0)
Rnf17077733
Maternal RNA0.99044
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018444
(v2.0)
Rnf17077733
714/3830.3849495/3830.2533122/3831.9174302/3830.983815/383-2.539140/383-2.0395
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018444
(v2.0)
Rnf17077733
411/1560.8806253/1560.5783121/1563.1383280/1562.15724/156-2.943782/156-1.51
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018444
(v2.0)
Rnf17077733
61.352212648.69
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018444
(v2.0)
Rnf17077733
16.55428020.69
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017917
(v1.0)
Rnf170NM_02996577733
18.120612.785711.51633.668933.44044
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017917
(v1.0)
Rnf170NM_02996577733
3.368342.134032.051350.6879560.692256
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017917
(v1.0)
Rnf170NM_02996577733
18.94681.5523913.9495
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017917
(v1.0)
Rnf170NM_02996577733
18.493912.65738.66057
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017917
(v1.0)
Rnf170NM_02996577733
2.167621.86162
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017917
(v1.0)
Rnf170NM_02996577733
18.95781.531139.49862
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017917
(v1.0)
Rnf170NM_02996577733
10.66233.54253.55633
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017917
(v1.0)
Rnf170NM_02996577733
0.6805240.530765
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017917
(v1.0)
Rnf170NM_02996577733
30.692117.1646
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017917
(v1.0)
Rnf170NM_02996577733
17.62614.5512
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017917
(v1.0)
1434956_atMm.291906Rnf170NM_029965.277733
552.9813.6669.600
0017917
(v1.0)
1437207_atMm.291906Rnf170NM_029965.277733
288.575463.525402.7500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017917
(v1.0)
A_52_P683038Rnf170BC03138377733
11P0.70.214P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017917
(v1.0)
Rnf17077733
20.29120.291