DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017997
GeneRpap2
Synonyms
Desc.RNA polymerase II associated protein 2
LocusNM_001163462 chr5:108026399-108071698(+)
NM_144911 chr5:108026736-108090857(+)
NM_001163461 chr5:108026736-108071698(+)
DB links


Entrez 231571
MGI 2141142
Ensembl ENSMUSG00000033773
Vega OTTMUSG00000023390
Featureprotein-coding
GO(BP)
  •   4 Terms
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      snRNA transcription (GO:0009301)
      dephosphorylation of RNA polymerase II C-terminal domain (GO:0070940)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018524
(v2.0)
Rpap2NM_001163461,NM_001163462,NM_001289569,NM_001289570,NM_144911231571
4.5366179.7921109.26614.265916.899512.12418.488495.565514.989313.1157
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017997
(v1.0)
Rpap2231571
Maternal RNA0.94137
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018524
(v2.0)
Rpap2231571
495/2950.2332363/2950.182599/2951.9822211/2950.842421/295-1.7076106/295-2.0604
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018524
(v2.0)
Rpap2231571
256/1210.5645180/1210.453696/1213.1442191/1211.967715/121-0.909965/121-1.4745
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018524
(v2.0)
Rpap2231571
53.666510650.63
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018524
(v2.0)
Rpap2231571
17.29696725.82
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017997
(v1.0)
Rpap2NM_001163461,NM_001163462,NM_144911231571
84.045276.99310.773811.844613.2512
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017997
(v1.0)
Rpap2NM_001163461,NM_001163462,NM_144911231571
912.726575.795102.55144.8941122.4
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017997
(v1.0)
Rpap2NM_001163461,NM_001163462,NM_144911231571
87.8771.6918884.001
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017997
(v1.0)
Rpap2NM_001163461,NM_001163462,NM_144911231571
85.776776.219971.9998
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017997
(v1.0)
Rpap2NM_001163461,NM_001163462,NM_144911231571
581.069838.93
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017997
(v1.0)
Rpap2NM_001163461,NM_001163462,NM_144911231571
87.92811.668778.9669
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017997
(v1.0)
Rpap2NM_001163461,NM_001163462,NM_144911231571
9.974911.436510.5892
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017997
(v1.0)
Rpap2NM_001163461,NM_001163462,NM_144911231571
129.918217.149
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017997
(v1.0)
Rpap2NM_001163461,NM_001163462,NM_144911231571
40.54958.42472
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017997
(v1.0)
Rpap2NM_001163461,NM_001163462,NM_144911231571
18.13555.99812
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017997
(v1.0)
4581C0942H10-3Mm.32675MGC27814231571
U005932NAP092918-001AW060207TC801017,TC801016U,F,23.42413.61932.93342.94072.9472.98662.9594
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017997
(v1.0)
1424559_atMm.482420Rpap2NM_001163462.1,NM_001163461.1,NM_144911.2231571
583.575396.025272.55150.9116.2
0017997
(v1.0)
1435034_atMm.482420Rpap2NM_001163462.1,NM_001163461.1,NM_144911.2231571
259.3333.975235.57500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017997
(v1.0)
A_51_P378558AW060207NM_144911231571
11P0.9670.805P
Proteome N/A