DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018026
GeneRpl23a
SynonymsMDA20
Desc.ribosomal protein L23A
LocusNM_207523 chr11:77994437-77997086(-)
DB links


Entrez 268449
MGI 3040672
Ensembl ENSMUSG00000058546
Vega OTTMUSG00000000095
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018554
(v2.0)
Rpl23aNM_207523268449
1511.07216.5717.9314657.7521816.927862.231386.4428.02911712.679432.08
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018026
(v1.0)
Rpl23a268449
Major ZGA0.98346
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018554
(v2.0)
Rpl23a268449
612/4070.0755383/407-0.2033125/4071.8671495/4071.6077156/4070.6688791/4070.3585
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018554
(v2.0)
Rpl23a268449
181/150-0.24142/150-0.193944/1501.7519180/1501.57838/150-2.0406105/150-1.1028
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018554
(v2.0)
Rpl23a268449
48.52516529.41
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018554
(v2.0)
Rpl23a268449
14.63575924.81
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018026
(v1.0)
Rpl23aNM_207523268449
225.02312.353489.7711263.27992.453
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018026
(v1.0)
Rpl23aNM_207523268449
0.36958100.6813540.880660.856798
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018026
(v1.0)
Rpl23aNM_207523268449
235.282552.61513.4774
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018026
(v1.0)
Rpl23aNM_207523268449
229.65912.228920.809
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018026
(v1.0)
Rpl23aNM_207523268449
235.419545.04622.8227
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018026
(v1.0)
Rpl23aNM_207523268449
453.4511219.741186.85
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018026
(v1.0)
Rpl23aNM_207523268449
0.8711861.68871
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018026
(v1.0)
Rpl23aNM_207523268449
37.2552498.647
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018026
(v1.0)
1426659_a_atMm.352675Rpl23a268449
1266.4501588.9254921.3754146.85
0018026
(v1.0)
1426660_x_atMm.352675Rpl23a268449
1758.8582.252054.0756725.9754781.35
0018026
(v1.0)
1437975_a_atMm.352675Rpl23a268449
764.6250753.4752998.552905.55
0018026
(v1.0)
1437976_x_atMm.352675Rpl23a268449
1773.52501960.8755766.354879.625
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018026
(v1.0)
A_51_P127516Rpl23aNM_207523268449
11P0.5570.107P
0018026
(v1.0)
A_52_P685714Rpl23aNM_207523268449
11P0.5260.0986P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018026
(v1.0)
Rpl23a268449
0060015