DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018047
GeneRpl38
SynonymsRbt
Ts
Tss
Desc.ribosomal protein L38
LocusNM_023372 chr11:114529857-114533645(+)
NM_001048057 chr11:114529857-114533645(+)
NM_001048058 chr11:114530095-114533645(+)
DB links


Entrez 67671
MGI 1914921
Ensembl ENSMUSG00000057322
Vega OTTMUSG00000003385
Featureprotein-coding
GO(BP)
GO(MF)
  •   1 Terms
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018575
(v2.0)
Rpl38NM_001048057,NM_02337267671
2138.6635.04864.98835294.309864.273356.756778.1533.6967833.686396.683
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018047
(v1.0)
Rpl3867671
MGA0.98859
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018575
(v2.0)
Rpl3867671
647/468-0.0455336/468-0.5927198/4682.3304663/4681.8282112/468-0.0052880/4680.311
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018575
(v2.0)
Rpl3867671
303/1870.1825151/187-0.4221188/1873.5257618/1873.038935/187-0.351300/1870.0821
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018575
(v2.0)
Rpl3867671
69.83618038.8
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018575
(v2.0)
Rpl3867671
11.824811410.37
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018047
(v1.0)
Rpl38NM_001048057,NM_02337267671
36.42633.42506219.336600.214551.341
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018047
(v1.0)
Rpl38NM_001048057,NM_02337267671
10.72440.094504922.063653.927162.887
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018047
(v1.0)
Rpl38NM_001048057,NM_02337267671
38.087782.1373.73681
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018047
(v1.0)
Rpl38NM_001048057,NM_02337267671
37.17673.390672.68107
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018047
(v1.0)
Rpl38NM_001048057,NM_02337267671
38.1092771.4242.9405
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018047
(v1.0)
Rpl38NM_001048057,NM_02337267671
203.071579.531576.044
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018047
(v1.0)
Rpl38NM_001048057,NM_02337267671
26.908245.5568
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018047
(v1.0)
Rpl38NM_001048057,NM_02337267671
7.82052408.352
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018047
(v1.0)
Rpl38NM_001048057,NM_02337267671
8.356867.22519
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018047
(v1.0)
12323H3141B12-3Mm.433300610025G13Rik67671
U013522NAP092637-001TC891761,TC891760,TC891751,TC891750,TC891749,TC891748,TC891747,TC815460Q9JJI8U,F,23.61583.2784.01144.96575.12065.16284.9976
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018047
(v1.0)
1433472_x_atMm.371629Rpl38NM_001048057.1,NM_023372.267671
1376.1182.0751266.27555.7254915.05
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018047
(v1.0)
A_51_P227332Rpl38NM_02337267671
11P0.6250.133P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018047
(v1.0)
Rpl3867671
221231