DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018131
GeneRpusd1
Synonyms
Desc.RNA pseudouridylate synthase domain containing 1
LocusNM_028009 chr17:25864696-25868401(+)
DB links


Entrez 106707
MGI 1919186
Ensembl ENSMUSG00000041199
Featureprotein-coding
GO(BP)
GO(MF)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018661
(v2.0)
Rpusd1NM_028009106707
2.924866.871055.2974418.0496.858978.7523718.41379.699438.5895710.8633
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018131
(v1.0)
Rpusd1106707
2-Cell Transient0.98042
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018661
(v2.0)
Rpusd1106707
770/622-0.2045373/622-0.852175/6220.5404110/622-1.160920/622-2.8403262/622-1.8407
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018661
(v2.0)
Rpusd1106707
289/263-0.3752156/263-0.865260/2631.427889/263-0.22954/263-3.681995/263-2.0511
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018661
(v2.0)
Rpusd1106707
131.847218770.51
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018661
(v2.0)
Rpusd1106707
36.5078941.02
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018131
(v1.0)
Rpusd1NM_028009106707
7.143583.6831913.41764.7556313.2742
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018131
(v1.0)
Rpusd1NM_028009106707
51.065812.216588.640724.309293.1651
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018131
(v1.0)
Rpusd1NM_028009106707
7.469271.069654.01844
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018131
(v1.0)
Rpusd1NM_028009106707
7.290753.646217.20129
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018131
(v1.0)
Rpusd1NM_028009106707
22.932918.141
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018131
(v1.0)
Rpusd1NM_028009106707
7.473611.0557.89813
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018131
(v1.0)
Rpusd1NM_028009106707
12.42264.591755.9178
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018131
(v1.0)
Rpusd1NM_028009106707
46.66295.4712
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018131
(v1.0)
Rpusd1NM_028009106707
0.1941738.33568
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018131
(v1.0)
Rpusd1NM_028009106707
1.186130.252004
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018131
(v1.0)
14456J0522D05-3Mm.246032310051D06Rik106707
U017683NAP006300-001TC920612,TC920609,TC920608Q9D6V42.63052.6122.8833.21152.99033.13393.0165
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018131
(v1.0)
1453253_a_atMm.24603Rpusd1NM_028009.3106707
128.875134.225181.650103.675
Agilent44K N/A
Proteome N/A