DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018198
GeneRtn4
SynonymsNgA
NOGO
Desc.reticulon 4
LocusNM_194054 chr11:29592898-29644414(+)
NM_194052 chr11:29592898-29644414(+)
NM_194053 chr11:29592898-29644414(+)
NM_194051 chr11:29593774-29644414(+)
NM_024226 chr11:29618563-29644414(+)
DB links


Entrez 68585
MGI 1915835
Ensembl ENSMUSG00000020458
Vega OTTMUSG00000005336
Featureprotein-coding
GO(BP)
  •   19 Terms
      angiogenesis (GO:0001525)
      nervous system development (GO:0007399)
      axonal fasciculation (GO:0007413)
      negative regulation of neuron projection development (GO:0010977)
      cerebral cortex radial glia guided migration (GO:0021801)
      negative regulation of cell growth (GO:0030308)
      regulation of cell migration (GO:0030334)
      negative regulation of axon extension (GO:0030517)
      positive regulation of dopamine secretion (GO:0033603)
      negative regulation of neuron differentiation (GO:0045665)
      positive regulation of glial cell differentiation (GO:0045687)
      regulation of axon regeneration (GO:0048679)
      negative regulation of axonogenesis (GO:0050771)
      regulation of sensory perception of pain (GO:0051930)
      regulation of nervous system development (GO:0051960)
      cardiac epithelial to mesenchymal transition (GO:0060317)
      negative regulation of neuron projection regeneration (GO:0070571)
      endoplasmic reticulum tubular network organization (GO:0071786)
      regulation of branching morphogenesis of a nerve (GO:2000172)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018730
(v2.0)
Rtn4NM_024226,NM_194051,NM_194052,NM_194053,NM_19405468585
91.06086.628735.6209685.4061176.63748.4429108.8782.87187162.82144.1739
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018198
(v1.0)
Rtn468585
MGA0.99965
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018730
(v2.0)
Rtn468585
494/3090.1636417/3090.31533/309-2.72654/309-1.170518/309-1.985169/309-2.7356
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018730
(v2.0)
Rtn468585
192/1030.3824169/1030.59351/103-2.246142/1030.03626/103-1.878531/103-2.2768
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018730
(v2.0)
Rtn468585
25.636110324.89
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018730
(v2.0)
Rtn468585
6.9638838.39
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018198
(v1.0)
Rtn4NM_024226,NM_194051,NM_194052,NM_194053,NM_19405468585
6.887593.8736163.5692122.58576.5014
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018198
(v1.0)
Rtn4NM_024226,NM_194051,NM_194052,NM_194053,NM_19405468585
16.56076.88267130.443242.374150.295
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018198
(v1.0)
Rtn4NM_024226,NM_194051,NM_194052,NM_194053,NM_19405468585
7.2016133.29964.2262
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018198
(v1.0)
Rtn4NM_024226,NM_194051,NM_194052,NM_194053,NM_19405468585
7.029483.834722.12527
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018198
(v1.0)
Rtn4NM_024226,NM_194051,NM_194052,NM_194053,NM_19405468585
10.59446.12912
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018198
(v1.0)
Rtn4NM_024226,NM_194051,NM_194052,NM_194053,NM_19405468585
7.2057932.84362.33093
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018198
(v1.0)
Rtn4NM_024226,NM_194051,NM_194052,NM_194053,NM_19405468585
58.8552118.361112.154
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018198
(v1.0)
Rtn4NM_024226,NM_194051,NM_194052,NM_194053,NM_19405468585
224.59191.214
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018198
(v1.0)
Rtn4NM_024226,NM_194051,NM_194052,NM_194053,NM_19405468585
6.3811537.8436
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018198
(v1.0)
Rtn4NM_024226,NM_194051,NM_194052,NM_194053,NM_19405468585
3.250555.21105
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018198
(v1.0)
3741C0873D01-3Rtn468585
U012413NAP034060-1Rtn4;TC901793Q99P72U,F,22.29552.32631.85732.26262.19682.19442.1822
0018198
(v1.0)
5540H3002D11-3Mm.27866Rtn468585
NAP017149-001TC8381932.09632.51282.81373.39873.38123.52793.3272
0018198
(v1.0)
10266H3093E01-3Mm.220966Rtn468585
U012413NAP121913-001Rtn4;TC871576,TC801313,TC799586,TC793355,TC793354Q99P72U,F,23.31173.25033.53443.77774.03144.01623.972
0018198
(v1.0)
11116H3108F05-3Mm.132186Rtn468585
NAP017149-001TC8381912.29292.37492.4362.62612.63892.83742.5782
0018198
(v1.0)
20127L0523D10-3Mm.220966Rtn468585
U012413NAP107139-1Rtn4;TC793354Q99P72U,F,23.68853.97564.41554.11093.58933.92533.6042
0018198
(v1.0)
20842L0815D02-3Rtn468585
U032606NAP121912-001MGC38936;U,F,23.55353.39543.3043.48173.68963.51753.6587
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018198
(v1.0)
1421116_a_atMm.472973Rtn468585
118.95136.925169.3289.45219.725
0018198
(v1.0)
1452649_atMm.472973Rtn468585
396.825459.7751967.6755495.9253035.875
0018198
(v1.0)
1435284_atMm.472973Rtn468585
002211214.2382.5
0018198
(v1.0)
1437224_atMm.472973Rtn468585
00405.852356.3251398.9
0018198
(v1.0)
1439650_atMm.472973Rtn468585
00326.51129.7785.4
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018198
(v1.0)
A_51_P160870Rtn4NM_19405468585
11P0.6660.167P
0018198
(v1.0)
A_52_P379337Rtn4NM_19405468585
11P0.5370.132P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018198
(v1.0)
Rtn468585
450560