DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018325
GeneSbds
SynonymsCGI-97
Desc.Shwachman-Bodian-Diamond syndrome homolog (human)
LocusNM_023248 chr5:130721602-130731332(-)
DB links


Entrez 66711
MGI 1913961
Ensembl ENSMUSG00000025337
Vega OTTMUSG00000027908
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Ribosome biogenesis in eukaryotes (mmu03008)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018858
(v2.0)
SbdsNM_02324866711
42.039197.2555147.3753.431180.942443.228323.1362169.44682.449453.8428
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018325
(v1.0)
Sbds66711
Minor ZGA0.93358
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018858
(v2.0)
Sbds66711
508/376-0.0785365/376-0.1586232/3762.8648663/3762.14215/376-3.927763/376-3.1462
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018858
(v2.0)
Sbds66711
232/175-0.1054175/175-0.1155223/1753.8605615/1753.12632/175-3.842426/175-3.2766
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018858
(v2.0)
Sbds66711
63.225116837.63
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018858
(v2.0)
Sbds66711
8.9854989.17
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018325
(v1.0)
SbdsNM_02324866711
101.077102.44339.757856.081716.4408
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018325
(v1.0)
SbdsNM_02324866711
89.803883.116734.49151.505815.1458
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018325
(v1.0)
SbdsNM_02324866711
105.68515.3741111.767
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018325
(v1.0)
SbdsNM_02324866711
103.159101.414125.626
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018325
(v1.0)
SbdsNM_02324866711
84.3891117.651
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018325
(v1.0)
SbdsNM_02324866711
105.74615.1636137.783
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018325
(v1.0)
SbdsNM_02324866711
36.809654.149256.99
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018325
(v1.0)
SbdsNM_02324866711
50.949847.3061
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018325
(v1.0)
SbdsNM_02324866711
112.78533.1059
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018325
(v1.0)
SbdsNM_02324866711
85.049281.1223
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018325
(v1.0)
20989L0823F02-3Mm.297844733401P19Rik66711
U026772NAP095294-0014733401P19Rik;TC925947P70122U,F3.74323.58953.43263.69733.56943.70193.6378
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018325
(v1.0)
1426480_atMm.280484SbdsNM_023248.166711
873.21145.375345.325441.05483.15
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018325
(v1.0)
A_51_P466875SbdsNM_02324866711
11P0.9160.541P
0018325
(v1.0)
A_52_P178738SbdsNM_02324866711
11P0.6170.132P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018325
(v1.0)
Sbds66711
030030