DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018453
GeneSdccag3
Synonyms
Desc.serologically defined colon cancer antigen 3
LocusNM_026563 chr2:26238320-26244836(-)
NM_001085407 chr2:26238320-26244836(-)
NM_001085408 chr2:26238320-26244836(-)
DB links


Entrez 68112
MGI 1915362
Ensembl ENSMUSG00000026927
Vega OTTMUSG00000012776
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018993
(v2.0)
Sdccag3NM_001085407,NM_001085408,NM_02656368112
96.242119.517324.13833.618730.975622.821115.419224.768229.73324.6363
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018453
(v1.0)
Sdccag368112
Major ZGA0.95365
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018993
(v2.0)
Sdccag368112
872/5680.1054537/568-0.1968789/5684.04652029/5683.16244/568-4.7806116/568-2.8749
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018993
(v2.0)
Sdccag368112
424/2020.5546273/2020.3169702/2025.31611680/2024.37032/202-4.044957/202-2.394
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018993
(v2.0)
Sdccag368112
102.404416362.82
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018993
(v2.0)
Sdccag368112
17.88917523.85
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018453
(v1.0)
Sdccag3NM_001085407,NM_001085408,NM_02656368112
20.293116.691125.049121.517810.9607
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018453
(v1.0)
Sdccag3FR037694,NM_001085407,NM_001085408,NM_02656368112
41.039332.176590.443787.336123.9781
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018453
(v1.0)
Sdccag3NM_001085407,NM_001085408,NM_02656368112
21.218335.196618.2104
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018453
(v1.0)
Sdccag3NM_001085407,NM_001085408,NM_02656368112
20.711116.523518.3654
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018453
(v1.0)
Sdccag3FR037694,NM_001085407,NM_001085408,NM_02656368112
32.67633.3415
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018453
(v1.0)
Sdccag3NM_001085407,NM_001085408,NM_02656368112
21.230634.714620.1426
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018453
(v1.0)
Sdccag3NM_001085407,NM_001085408,NM_02656368112
23.191620.776220.5123
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018453
(v1.0)
Sdccag3FR037694,NM_001085407,NM_001085408,NM_02656368112
109.40176.9788
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018453
(v1.0)
Sdccag3NM_001085407,NM_001085408,NM_02656368112
9.4618515.1408
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018453
(v1.0)
Sdccag3NM_001085407,NM_001085408,NM_02656368112
2.774535.33006
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018453
(v1.0)
1712C0245G10-3Mm.21406C330016H24Rik68112
C330016H24Rik3.54293.64223.84193.65683.96393.86783.9986
0018453
(v1.0)
9509H3082E08-3Mm.21406C330016H24Rik68112
U022422NAP000682-001C330016H24Rik;TC869300,TC869296,TC869295,TC869294Q9D1V23.24543.15143.02963.15353.15883.07893.1185
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018453
(v1.0)
1429554_atMm.253771Sdccag3NM_026563.3,NM_001085407.1,NM_001085408.168112
82.5574.525102.575062.575
Agilent44K N/A
Proteome N/A