DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018654
GeneSet
SynonymsStF-IT-1
Desc.SET nuclear oncogene
LocusNM_023871 chr2:29917516-29928097(+)
NM_001204875 chr2:29921994-29928097(+)
DB links


Entrez 56086
MGI 1860267
Ensembl ENSMUSG00000054766
Vega OTTMUSG00000016726
Featureprotein-coding
GO(BP)
  •   3 Terms
      nucleosome assembly (GO:0006334)
      negative regulation of neuron apoptotic process (GO:0043524)
      negative regulation of transcription, DNA-dependent (GO:0045892)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019195
(v2.0)
SetNM_001204875,NM_02387156086
27.80535.072464.52794188.944505.841276.705109.5242.04526399.268336.661
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018654
(v1.0)
Set56086
MGA0.9869
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019195
(v2.0)
Set56086
845/3420.7904468/3420.3354187/3422.6875756/3422.467148/3420.8416832/3420.6816
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019195
(v2.0)
Set56086
418/1371.0909224/1370.589666/1372.4467217/1371.975218/137-0.8355144/137-0.5229
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019195
(v2.0)
Set56086
27.510315317.98
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019195
(v2.0)
Set56086
11.894110611.22
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018654
(v1.0)
SetNM_02387156086
5.943254.1957202.77506.607101.946
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018654
(v1.0)
SetNM_02387156086
0.08774860.05809682.717246.658181.01589
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018654
(v1.0)
SetNM_02387156086
6.2142113.82974.5776
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018654
(v1.0)
SetNM_02387156086
6.065694.153571.69437
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018654
(v1.0)
SetNM_02387156086
0.05903560.0258621
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018654
(v1.0)
SetNM_02387156086
6.2178213.64031.85833
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018654
(v1.0)
SetNM_02387156086
187.734489.149392.686
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018654
(v1.0)
SetNM_02387156086
6.58623.95331
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018654
(v1.0)
SetNM_02387156086
3.09441125.008
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018654
(v1.0)
SetNM_02387156086
0.5715771.54013
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018654
(v1.0)
2502C0330D06-3Mm.222071U042274NAP041138-1Set;TC879040Q9CRT3U,F,22.73232.74422.61842.68242.66862.70272.6535
0018654
(v1.0)
4811G0108D08-3Mm.28805Set56086
U028364NAP109910-1TC930699,TC930697,TC930696,TC908842Q9CRT3U,F,23.02223.23043.64893.38533.08523.41173.1918
0018654
(v1.0)
9505H3082E02-3Mm.28805Set56086
U042274NAP025584-001Set;TC908842Q9CRT3U,F,23.24263.4013.87474.53794.32564.45414.2528
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018654
(v1.0)
1426854_a_atMm.335942SetNM_001204875.1,NM_023871.456086
191.225277.32815.57504.253920.8
0018654
(v1.0)
1426853_atMm.335942SetNM_001204875.1,NM_023871.456086
103.025112.95440.2751665.6251012.7
0018654
(v1.0)
1421819_a_atMm.335942SetNM_001204875.1,NM_023871.456086
00606.0251694.125790.75
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018654
(v1.0)
A_52_P212293SetAK03156156086
11P0.080.0251P
0018654
(v1.0)
A_52_P619761SetNM_02387156086
11P0.3290.0702P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018654
(v1.0)
Set56086
220230