DBTMEE:0019307
| Gene | Smarca2 |
| Synonyms | brm
Snf2l2 |
| Description | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 |
| Locus | NM_011416 UCSC: chr19:26679650-26852811(+) OLP: chr19:26679650-26852811(+)
NM_026003 UCSC: chr19:26822893-26852811(+) OLP: chr19:26822893-26852811(+)
|
| DB links |
Entrez 67155
MGI 99603
Ensembl ENSMUSG00000024921
Vega OTTMUSG00000040069
|
| Feature | protein-coding |
| GO_BP |
-
 11 Terms
chromatin organization (GO:0006325)
nucleosome assembly (GO:0006334)
transcription, DNA-dependent (GO:0006351)
regulation of transcription, DNA-dependent (GO:0006355)
nervous system development (GO:0007399)
negative regulation of cell proliferation (GO:0008285)
negative regulation of cell growth (GO:0030308)
aortic smooth muscle cell differentiation (GO:0035887)
negative regulation of transcription, DNA-dependent (GO:0045892)
positive regulation of transcription, DNA-dependent (GO:0045893)
positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
|
| GO_MF |
-
11 Terms
|
| GO_CC |
-
8 Terms
|
| KEGG | |
| Ver2_FPKM |
see DBTMEE:2019865 (v2.0)
|
| SPR_Histone_Erkek_5KaroundTSS |
N/A |
| SPR_Histone_Erkek_2KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_5KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_2KaroundTSS |
N/A |
| SOLiD_OocyteTo4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | MEF_FPKM |
|---|
0019307
(v1.0) | Smarca2 | NM_011416,NM_026003 | 67155
| 53.9553 | 82.5319 | 19.8156 | 3.50756 | 22.09 | |
|
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | 1C_FPKM |
|---|
0019307
(v1.0) | Smarca2 | NM_011416,NM_026003 | 67155
| 56.4152 | 8.04163 | 90.0441 |
|
| SOLiD_Partheno1C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 1C_FPKM | p1C_FPKM |
|---|
0019307
(v1.0) | Smarca2 | NM_011416,NM_026003 | 67155
| 55.0668 | 81.7032 | 67.6825 |
|
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | p1C_FPKM |
|---|
0019307
(v1.0) | Smarca2 | NM_011416,NM_026003 | 67155
| 56.448 | 7.93149 | 74.2319 |
|
| SOLiD_Partheno4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | 2C_FPKM | 4C_FPKM | p4C_FPKM |
|---|
0019307
(v1.0) | Smarca2 | NM_011416,NM_026003 | 67155
| 18.3462 | 3.38669 | 6.79828 |
|
| Illumina_Oo_2C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 2C_FPKM |
|---|
0019307
(v1.0) | Smarca2 | NM_011416,NM_026003 | 67155
| 344.39 | 90.4709 |
|
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_1_1 | Oo_2_1 |
|---|
0019307
(v1.0) | Smarca2 | NM_011416,NM_026003 | 67155
| 15.4014 | 13.6678 |
|
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0019307
(v1.0) | 5219 | AI116863.1 | | Smarca2 | 20584
| U043718 | NAP012125-001 | 2610209L14Rik;Smarca2; | TC925874,TC925873 | Q9CTU8 | U,F,2 | 2.2105 | 2.2811 | 2.2326 | 2.0036 | 2.1457 | 1.9061 | 1.9975 |
0019307
(v1.0) | 16105 | K0330B01-3 | Mm.154418 | | | U043718 | NAP041226-1 | 2610209L14Rik;Smarca2; | | Q9CTU8 | U,F,2 | 2.771 | 2.8166 | 2.7141 | 2.7129 | 3.1465 | 2.8914 | 2.9583 |
0019307
(v1.0) | 17171 | K0539H02-3 | Mm.12184 | 2610209L14Rik | 67155
| U043718 | NAP096358-001 | 2610209L14Rik;Smarca2; | TC825517,TC825516 | Q9CTU8 | U,F,2 | 3.6669 | 3.6845 | 3.9983 | 3.8259 | 3.8044 | 3.8359 | 3.7519 |
0019307
(v1.0) | 18571 | L0215E07-3 | Mm.12184 | 2610209L14Rik | 67155
| U043718 | NAP096358-001 | 2610209L14Rik;Smarca2; | TC825516,TC825511,TC825506 | Q9CTU8 | U,F,2 | 3.3459 | 3.6733 | 3.1286 | 2.7842 | 2.2426 | 2.4515 | 2.2046 |
|
| MOE430 |
| DBTMEE | Probe_ID | Unigene | Gene | RefSeq | Entrez | Oo | 1C | 2C | 8C | Blastocyst |
|---|
0019307
(v1.0) | 1430526_a_at | Mm.485812 | Smarca2 | NM_011416.2,NM_026003.2 | 67155
| 252.05 | 212.4 | 609.15 | 0 | 0 |
0019307
(v1.0) | 1452333_at | Mm.485812 | Smarca2 | NM_011416.2,NM_026003.2 | 67155
| 115.9 | 132.75 | 0 | 0 | 0 |
|
| Agilent44K |
| DBTMEE | Probe_ID | Gene | Acc | Entrez | Oo1_xFold | Oo1_pVal | Oo1_Flag | Oo2_xFold | Oo2_pVal | Oo2_Flag |
|---|
0019307
(v1.0) | A_51_P450052 | Smarca2 | NM_026003 | 67155
| 1 | 1 | P | 0.461 | 0.083 | P |
|
| Proteome |
| DBTMEE | Gene | Entrez | GV_seqCount | MII_seqCount | Zygote_seqCount | GV_specCount | MII_specCount | Zygote_specCount |
|---|
0019307
(v1.0) | Smarca2 | 67155
| 0 | 0 | 1 | 0 | 0 | 1 |
|
