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DB status: OK
Last modified: 2024/03/24

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DBTMEE:0019308

Gene	Smarca4
Synonyms	Brg1 SNF2beta SW1/SNF
Description	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Locus	NM_011417 UCSC: chr9:21420613-21508674(+) OLP: chr9:21420613-21508674(+) NM_001174079 UCSC: chr9:21420613-21508674(+) OLP: chr9:21420613-21508674(+) NM_001174078 UCSC: chr9:21420613-21508674(+) OLP: chr9:21420613-21508674(+)
DB links	Entrez 20586 MGI 88192 Ensembl ENSMUSG00000032187 Vega OTTMUSG00000037140
Feature	protein-coding
GO_BP	40 Terms negative regulation of transcription from RNA polymerase II promoter (GO:0000122) cell morphogenesis (GO:0000902) vasculogenesis (GO:0001570) in utero embryonic development (GO:0001701) blastocyst growth (GO:0001832) blastocyst hatching (GO:0001835) liver development (GO:0001889) ATP catabolic process (GO:0006200) nucleosome assembly (GO:0006334) nucleosome disassembly (GO:0006337) chromatin remodeling (GO:0006338) methylation-dependent chromatin silencing (GO:0006346) transcription, DNA-dependent (GO:0006351) regulation of transcription, DNA-dependent (GO:0006355) nervous system development (GO:0007399) glial cell fate determination (GO:0007403) heart development (GO:0007507) DNA methylation on cytosine within a CG sequence (GO:0010424) chromatin modification (GO:0016568) stem cell maintenance (GO:0019827) extracellular matrix organization (GO:0030198) keratinocyte differentiation (GO:0030216) negative regulation of cell growth (GO:0030308) forebrain development (GO:0030900) hindbrain development (GO:0030902) embryonic hindlimb morphogenesis (GO:0035116) aortic smooth muscle cell differentiation (GO:0035887) ATP-dependent chromatin remodeling (GO:0043044) positive regulation of DNA binding (GO:0043388) positive regulation by host of viral transcription (GO:0043923) histone H3 acetylation (GO:0043966) negative regulation of transcription, DNA-dependent (GO:0045892) positive regulation of transcription, DNA-dependent (GO:0045893) positive regulation of transcription from RNA polymerase II promoter (GO:0045944) embryonic organ morphogenesis (GO:0048562) epidermis morphogenesis (GO:0048730) positive regulation of sequence-specific DNA binding transcription factor activity (GO:0051091) definitive erythrocyte differentiation (GO:0060318) heart trabecula formation (GO:0060347) negative regulation of androgen receptor signaling pathway (GO:0060766)
GO_MF	23 Terms nucleotide binding (GO:0000166) RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977) RNA polymerase II transcription coactivator activity (GO:0001105) p53 binding (GO:0002039) nucleic acid binding (GO:0003676) DNA binding (GO:0003677) chromatin binding (GO:0003682) transcription coactivator activity (GO:0003713) transcription corepressor activity (GO:0003714) helicase activity (GO:0004386) protein binding (GO:0005515) ATP binding (GO:0005524) DNA-dependent ATPase activity (GO:0008094) transcription factor binding (GO:0008134) hydrolase activity (GO:0016787) hydrolase activity, acting on acid anhydrides (GO:0016817) hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides (GO:0016818) ATPase activity (GO:0016887) Tat protein binding (GO:0030957) protein complex binding (GO:0032403) protein N-terminus binding (GO:0047485) androgen receptor binding (GO:0050681) histone acetyl-lysine binding (GO:0070577)
GO_CC	10 Terms nuclear chromatin (GO:0000790) heterochromatin (GO:0000792) nucleus (GO:0005634) nuclear euchromatin (GO:0005719) perichromatin fibrils (GO:0005726) nucleolus (GO:0005730) SWI/SNF complex (GO:0016514) npBAF complex (GO:0071564) nBAF complex (GO:0071565) WINAC complex (GO:0071778)
KEGG
Ver2_FPKM	see  (v2.0)
SPR_Histone_Erkek_5KaroundTSS	N/A
SPR_Histone_Erkek_2KaroundTSS	N/A
SPR_Methy_Kobayashi_5KaroundTSS	N/A
SPR_Methy_Kobayashi_2KaroundTSS	N/A
SOLiD_OocyteTo4C_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez SPR_FPKM Oo_FPKM 1C_FPKM 2C_FPKM 4C_FPKM MEF_FPKM 0019308 (v1.0) Smarca4 NM_001174078,NM_001174079,NM_011417 20586 31.3273 20.7577 53.0249 71.3381 16.1161
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided	N/A
SOLiD_Partheno1C_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez Oo_FPKM 1C_FPKM p1C_FPKM 0019308 (v1.0) Smarca4 NM_001174078,NM_001174079,NM_011417 20586 31.9726 20.5492 28.7098
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided	N/A
SOLiD_Partheno4C_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez 2C_FPKM 4C_FPKM p4C_FPKM 0019308 (v1.0) Smarca4 NM_001174078,NM_001174079,NM_011417 20586 49.0928 68.8798 49.1811
Illumina_Oo_2C_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez Oo_FPKM 2C_FPKM 0019308 (v1.0) Smarca4 NM_001174078,NM_001174079,NM_011417 20586 18.0579 20.9767
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez Oo_1_1 Oo_2_1 0019308 (v1.0) Smarca4 NM_001174078,NM_001174079,NM_011417 20586 9.56642 10.2315
NIA60mer	DBTMEE Array_Feature_Number Oligo_Parent_Clone Unigene Gene Entrez U_Cluster NAP_Cluster Gene_U/NAP TIGR SwissProt EST Oo 1C 2C 4C 8C Morula Blastocyst 0019308 (v1.0) 5167 U53563.1 U010150 NAP092527-001 Smarca4; TC824865,TC824853 O35845 U,F,2 2.0467 2.0828 1.8295 1.9653 2.2237 1.9595 2.1276 0019308 (v1.0) 6449 H3025C11-3 Mm.200406 Smarca4 20586 U010150 NAP092527-001 Smarca4; TC824854,TC824853 O35845 U,F,2 3.3113 3.5168 4.0243 4.3749 3.329 3.7844 3.5497 0019308 (v1.0) 19788 L0304D06-3 Mm.200406 Smarca4 20586 U010150 NAP092526-001 Smarca4; TC824866,TC824853 O35845 U,F,2 2.9683 3.0423 3.3547 3.6039 2.8503 3.3307 3.0332
MOE430	DBTMEE Probe_ID Unigene Gene RefSeq Entrez Oo 1C 2C 8C Blastocyst 0019308 (v1.0) 1426804_at Mm.286593 Smarca4 NM_001174078.1,NM_011417.3,NM_001174079.1 20586 190.6 184.675 441.925 646.325 341.425
Agilent44K	DBTMEE Probe_ID Gene Acc Entrez Oo1_xFold Oo1_pVal Oo1_Flag Oo2_xFold Oo2_pVal Oo2_Flag 0019308 (v1.0) A_51_P331702 Smarca4 NM_011417 20586 1 1 P 0.751 0.213 P 0019308 (v1.0) A_51_P479733 Smarca4 NM_011417 20586 1 1 P 1.561 0.155 P
Proteome	DBTMEE Gene Entrez GV_seqCount MII_seqCount Zygote_seqCount GV_specCount MII_specCount Zygote_specCount 0019308 (v1.0) Smarca4 20586 2 0 0 2 0 0