DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019308
GeneSmarca4
SynonymsBrg1
SNF2beta
SW1/SNF
Desc.SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
LocusNM_011417 chr9:21420613-21508674(+)
NM_001174079 chr9:21420613-21508674(+)
NM_001174078 chr9:21420613-21508674(+)
DB links


Entrez 20586
MGI 88192
Ensembl ENSMUSG00000032187
Vega OTTMUSG00000037140
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM N/A
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019308
(v1.0)
Smarca420586
MGA0.98462
SPR_Histone_Erkek_+-5KfromTSS N/A
SPR_Histone_Erkek_+-2KfromTSS N/A
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019866
(v2.0)
Smarca420586
48.354713835.04
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019866
(v2.0)
Smarca420586
7.9723958.39
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019308
(v1.0)
Smarca4NM_001174078,NM_001174079,NM_01141720586
31.327320.757753.024971.338116.1161
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019308
(v1.0)
Smarca4NM_001174078,NM_001174079,NM_01141720586
31.972620.549228.7098
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019308
(v1.0)
Smarca4NM_001174078,NM_001174079,NM_01141720586
379.324475.484
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019308
(v1.0)
Smarca4NM_001174078,NM_001174079,NM_01141720586
49.092868.879849.1811
SOLiD_NMNR_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019308
(v1.0)
Smarca4NM_001174078,NM_001174079,NM_01141720586
18.057920.9767
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019308
(v1.0)
Smarca4NM_001174078,NM_001174079,NM_01141720586
9.5664210.2315
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019308
(v1.0)
5167U53563.1U010150NAP092527-001Smarca4;TC824865,TC824853O35845U,F,22.04672.08281.82951.96532.22371.95952.1276
0019308
(v1.0)
6449H3025C11-3Mm.200406Smarca420586
U010150NAP092527-001Smarca4;TC824854,TC824853O35845U,F,23.31133.51684.02434.37493.3293.78443.5497
0019308
(v1.0)
19788L0304D06-3Mm.200406Smarca420586
U010150NAP092526-001Smarca4;TC824866,TC824853O35845U,F,22.96833.04233.35473.60392.85033.33073.0332
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019308
(v1.0)
1426804_atMm.286593Smarca4NM_001174078.1,NM_011417.3,NM_001174079.120586
190.6184.675441.925646.325341.425
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019308
(v1.0)
A_51_P331702Smarca4NM_01141720586
11P0.7510.213P
0019308
(v1.0)
A_51_P479733Smarca4NM_01141720586
11P1.5610.155P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019308
(v1.0)
Smarca420586
200200