DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019309
GeneSmarca5
SynonymsMommeD4
Snf2h
Desc.SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
LocusNM_053124 chr8:83223843-83263358(-)
DB links


Entrez 93762
MGI 1935129
Ensembl ENSMUSG00000031715
Vega OTTMUSG00000023886
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019867
(v2.0)
Smarca5NM_05312493762
6.7685624.183830.69999.3742116.8548.450723.043224.4717101.65937.9823
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019309
(v1.0)
Smarca593762
Major ZGA0.99449
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019867
(v2.0)
Smarca593762
610/3480.2961453/3480.2635192/3482.7011588/3482.080136/348-1.1929316/348-0.7358
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019867
(v2.0)
Smarca593762
341/1300.8734227/1300.6838187/1304.0045565/1303.42597/130-2.010149/130-1.9741
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019867
(v2.0)
Smarca593762
36.977515024.65
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019867
(v2.0)
Smarca593762
10.65781228.74
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019309
(v1.0)
Smarca5NM_05312493762
25.122321.174373.960981.076316.349
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019309
(v1.0)
Smarca5FR376332,NM_05312493762
13.014710.14639.36567.946912.926
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019309
(v1.0)
Smarca5NM_05312493762
26.26762.4753323.1017
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019309
(v1.0)
Smarca5NM_05312493762
25.639820.961718.1531
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019309
(v1.0)
Smarca5NM_05312493762
9.696666.90534
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019309
(v1.0)
Smarca5NM_05312493762
26.28292.4414319.9097
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019309
(v1.0)
Smarca5NM_05312493762
68.476378.282470.0332
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019309
(v1.0)
Smarca5FR376332,NM_05312493762
67.21454.4889
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019309
(v1.0)
Smarca5NM_05312493762
21.061388.7914
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019309
(v1.0)
Smarca5NM_05312493762
4.3668714.6153
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019309
(v1.0)
5110AA190286.1Mm.133447Smarca593762
U030004NAP000002-009Smarca5;TC904326U,F,23.96183.98334.12924.49964.50764.41154.384
0019309
(v1.0)
5178AA675554.1Mm.133447Smarca593762
U030004NAP000002-009TC904326U,F,23.2263.02963.09183.41942.83333.19752.9911
0019309
(v1.0)
8168H3061A01-3Mm.133447Smarca593762
U030004NAP100298-001Smarca5;TC904326U,F,22.64392.60612.65462.83312.57172.77522.6581
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019309
(v1.0)
1424205_atMm.246803Smarca5NM_053124.293762
340.3457.05196.55507.875241.225
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019309
(v1.0)
A_51_P221661Smarca5NM_05312493762
11P1.1730.363P
0019309
(v1.0)
A_52_P207203Smarca5NM_05312493762
11P1.8250.122P
0019309
(v1.0)
A_52_P304881Smarca5NM_05312493762
11P2.2140.0991P
0019309
(v1.0)
A_52_P601095Smarca5NM_05312493762
11P1.4660.166P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019309
(v1.0)
Smarca593762
020020