DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019348
GeneSmndc1
Synonyms
Desc.survival motor neuron domain containing 1
LocusNM_172429 chr19:53453704-53465063(-)
DB links


Entrez 76479
MGI 1923729
Ensembl ENSMUSG00000025024
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019924
(v2.0)
Smndc1NM_17242976479
9.0793411.277230.124743.252734.762233.75127.1528120.377322.187437.2485
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019348
(v1.0)
Smndc176479
2-Cell Transient0.86012
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019924
(v2.0)
Smndc176479
741/4280.2785507/4280.1279224/4282.633588/4281.783520/428-2.3053118/428-2.4431
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019924
(v2.0)
Smndc176479
415/1800.6893266/1800.4451216/1803.7766535/1802.88558/180-2.297156/180-2.2533
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019924
(v2.0)
Smndc176479
60.001216237.04
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019924
(v2.0)
Smndc176479
22.73412318.48
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019348
(v1.0)
Smndc1NM_17242976479
11.721520.728532.152424.05044.90117
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019348
(v1.0)
Smndc1NM_17242976479
15.550830.429851.916334.48759.56143
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019348
(v1.0)
Smndc1NM_17242976479
12.25593.3204122.6152
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019348
(v1.0)
Smndc1NM_17242976479
11.96320.520415.0752
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019348
(v1.0)
Smndc1NM_17242976479
29.670242.8378
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019348
(v1.0)
Smndc1NM_17242976479
12.2633.2749316.534
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019348
(v1.0)
Smndc1NM_17242976479
29.768123.221715.3066
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019348
(v1.0)
Smndc1NM_17242976479
20.363412.6916
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019348
(v1.0)
Smndc1NM_17242976479
10.113869.1892
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019348
(v1.0)
Smndc1NM_17242976479
12.089623.4062
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019348
(v1.0)
10376H3094H08-3Mm.416702410004J23Rik76479
U039148NAP093876-0012410004J23Rik;TC875650,TC875649,TC875648U,F,23.34043.28913.50643.64793.40793.37753.2808
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019348
(v1.0)
1452999_atMm.313687Smndc1NM_172429.276479
206.725305.875724.5299.6254.275
0019348
(v1.0)
1443396_atMm.313687Smndc1NM_172429.276479
00187.4236.475195
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019348
(v1.0)
A_51_P225179Smndc1NM_17242976479
11P1.1280.441P
Proteome N/A