DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019526
GeneSnrnp40
SynonymsWdr57
Desc.small nuclear ribonucleoprotein 40 (U5)
LocusNM_025645 chr4:130037379-130067278(+)
DB links


Entrez 66585
MGI 1913835
Ensembl ENSMUSG00000074088
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020103
(v2.0)
Snrnp40NM_02564566585
10.942850.667327.607419.968532.087224.873214.510837.650430.129427.9421
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019526
(v1.0)
Snrnp4066585
Maternal RNA0.94474
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020103
(v2.0)
Snrnp4066585
689/4640.0574424/464-0.2457132/4641.7611373/4641.012415/464-2.8131111/464-2.6465
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020103
(v2.0)
Snrnp4066585
332/2300.0167203/230-0.2949120/2302.6003343/2301.89646/230-3.006257/230-2.5804
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020103
(v2.0)
Snrnp4066585
65.318413747.68
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020103
(v2.0)
Snrnp4066585
16.52998519.45
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019526
(v1.0)
Snrnp40NM_02564566585
52.666219.210714.872122.283810.4734
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019526
(v1.0)
Snrnp40NM_02564566585
70.916822.775518.141428.5413.076
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019526
(v1.0)
Snrnp40NM_02564566585
55.06734.0018820.9593
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019526
(v1.0)
Snrnp40NM_02564566585
53.751119.017827.9552
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019526
(v1.0)
Snrnp40NM_02564566585
23.123433.9359
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019526
(v1.0)
Snrnp40NM_02564566585
55.09933.9470730.6603
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019526
(v1.0)
Snrnp40NM_02564566585
13.769221.515920.8529
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019526
(v1.0)
Snrnp40NM_02564566585
28.231325.8572
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019526
(v1.0)
Snrnp40NM_02564566585
35.86318.3118
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019526
(v1.0)
Snrnp40NM_02564566585
10.276618.7924
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019526
(v1.0)
10407H3095E11-3Mm.296060610009C03Rik66585
U004884NAP008662-0010610009C03Rik;TC904235Q9DCX3U,F,23.0333.09793.35953.25363.03673.16913.0032
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019526
(v1.0)
1452713_a_atMm.423019Snrnp40NM_025645.266585
663.15658.425304.6443.7614.75
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019526
(v1.0)
A_51_P397564Wdr57NM_02564566585
11P1.0230.857P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019526
(v1.0)
Snrnp4066585
010010