DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0019599

Gene

Sorbs1

Synonyms

c-Cbl-associated protein
CAP
Ponsin
Sh3d5

Description

sorbin and SH3 domain containing 1

Locus

NM_178362 UCSC: chr19:40366530-40588226(-) OLP: chr19:40366530-40588226(-)
NM_009166 UCSC: chr19:40366530-40588302(-) OLP: chr19:40366530-40588302(-)
NM_001034964 UCSC: chr19:40366530-40476800(-) OLP: chr19:40366530-40476800(-)
NM_001034963 UCSC: chr19:40366530-40525888(-) OLP: chr19:40366530-40525888(-)
NM_001034962 UCSC: chr19:40366530-40525888(-) OLP: chr19:40366530-40525888(-)

DB links

Entrez 20411
MGI 700014
Ensembl ENSMUSG00000025006

Feature

protein-coding

GO_BP

10 Terms

GO_MF

4 Terms

GO_CC

14 Terms

KEGG

3 Terms

see DBTMEE:2020175 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0019599 (v1.0)	Sorbs1	NM_001034962,NM_001034963,NM_001034964,NM_009166,NM_178362	20411	46.4715	42.5854	19.8503	15.3355	0.563865

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0019599 (v1.0)	Sorbs1	NM_001034962,NM_001034963,NM_001034964,NM_009166,NM_178362	20411	48.5902	1.9915	46.4616

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0019599 (v1.0)	Sorbs1	NM_001034962,NM_001034963,NM_001034964,NM_009166,NM_178362	20411	47.4288	42.1578	34.8954

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0019599 (v1.0)	Sorbs1	NM_001034962,NM_001034963,NM_001034964,NM_009166,NM_178362	20411	48.6184	1.96423	38.2721

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0019599 (v1.0)	Sorbs1	NM_001034962,NM_001034963,NM_001034964,NM_009166,NM_178362	20411	18.3783	14.807	13.754

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0019599 (v1.0)	Sorbs1	NM_001034962,NM_001034963,NM_001034964,NM_009166,NM_178362	20411	27.5115	10.7618

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0019599 (v1.0)	Sorbs1	NM_001034962,NM_001034963,NM_001034964,NM_009166,NM_178362	20411	34.6996	52.0912

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0019599 (v1.0)	6687	H3031C08-3	Mm.29030	Sorbs1	20411	U039019	NAP090049-1	Sh3d5;Sorbs1;	TC892128,TC892125,TC892124,TC892123,TC860376	Q62417	U,F,2	4.4787	4.5486	3.709	3.6591	3.3745	3.7044	3.5717
0019599 (v1.0)	11381	H3114D04-3		2310065E01Rik	75688	U039019	NAP022601-001	Sh3d5;Sorbs1;	TC892125	Q62417	U,F,2	3.9892	3.7758	2.8991	2.9839	3.127	3.0631	3.0731

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0019599 (v1.0)	1425826_a_at	Mm.210815	Sorbs1	NM_178362.1,NM_009166.3,NM_001034963.1,NM_001034962.1,NM_001034964.1	20411	285.65	619.275	181.65	186.7	126.075
0019599 (v1.0)	1436737_a_at	Mm.210815	Sorbs1	NM_178362.1,NM_009166.3,NM_001034963.1,NM_001034962.1,NM_001034964.1	20411	835.95	1876.03	716.925	449.4	363.8
0019599 (v1.0)	1428471_at	Mm.210815	Sorbs1	NM_178362.1,NM_009166.3,NM_001034963.1,NM_001034962.1,NM_001034964.1	20411	1040.72	1260.65	572.125	534	672.9

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0019599 (v1.0)	A_51_P253117	Sorbs1	NM_009166	20411	1	1	P	0.706	0.177	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0019599 (v1.0)	Sorbs1	20411	5.25	0	0.88	5.25	0	2.62