DBTMEE:0019733
| Gene | Spg20 |
| Synonyms | TAHCCP1 |
| Description | spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) |
| Locus | NM_001144988 UCSC: chr3:54916030-54941254(+) OLP: chr3:54916030-54941254(+)
NM_144895 UCSC: chr3:54916030-54941254(+) OLP: chr3:54916030-54941254(+)
NM_001144987 UCSC: chr3:54916088-54941254(+) OLP: chr3:54916088-54941254(+)
|
| DB links |
Entrez 229285
MGI 2139806
Ensembl ENSMUSG00000036580
Vega OTTMUSG00000026686
|
| Feature | protein-coding |
| GO_BP |
-
 7 Terms
|
| GO_MF |
-
2 Terms
|
| GO_CC |
-
4 Terms
|
| KEGG | |
| Ver2_FPKM |
see DBTMEE:2020315 (v2.0)
|
| SPR_Histone_Erkek_5KaroundTSS |
N/A |
| SPR_Histone_Erkek_2KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_5KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_2KaroundTSS |
N/A |
| SOLiD_OocyteTo4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | MEF_FPKM |
|---|
0019733
(v1.0) | Spg20 | NM_001144987,NM_001144988,NM_144895 | 229285
| 36.8735 | 46.6575 | 17.918 | 5.25076 | 8.42695 | |
|
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | 1C_FPKM |
|---|
0019733
(v1.0) | Spg20 | NM_001144987,NM_001144988,NM_144895 | 229285
| 38.5546 | 5.41835 | 50.9043 |
|
| SOLiD_Partheno1C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 1C_FPKM | p1C_FPKM |
|---|
0019733
(v1.0) | Spg20 | NM_001144987,NM_001144988,NM_144895 | 229285
| 37.6331 | 46.189 | 46.9286 |
|
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | p1C_FPKM |
|---|
0019733
(v1.0) | Spg20 | NM_001144987,NM_001144988,NM_144895 | 229285
| 38.577 | 5.34414 | 51.4697 |
|
| SOLiD_Partheno4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | 2C_FPKM | 4C_FPKM | p4C_FPKM |
|---|
0019733
(v1.0) | Spg20 | NM_001144987,NM_001144988,NM_144895 | 229285
| 16.5893 | 5.06982 | 6.36462 |
|
| Illumina_Oo_2C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 2C_FPKM |
|---|
0019733
(v1.0) | Spg20 | NM_001144987,NM_001144988,NM_144895 | 229285
| 24.916 | 7.17614 |
|
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_1_1 | Oo_2_1 |
|---|
0019733
(v1.0) | Spg20 | NM_001144987,NM_001144988,NM_144895 | 229285
| 17.6723 | 18.3955 |
|
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0019733
(v1.0) | 13634 | J0061E10-3 | Mm.129025 | MGC28621 | 229285
| U003243 | NAP001338-002 | MGC28621; | TC804925,TC804924 | | U,F | 4.148 | 4.0747 | 3.6966 | 3.5435 | 4.3824 | 3.9945 | 4.2777 |
|
| MOE430 |
N/A |
| Agilent44K |
| DBTMEE | Probe_ID | Gene | Acc | Entrez | Oo1_xFold | Oo1_pVal | Oo1_Flag | Oo2_xFold | Oo2_pVal | Oo2_Flag |
|---|
0019733
(v1.0) | A_51_P394269 | Spg20 | AK087388 | 229285
| 1 | 1 | P | 0.645 | 0.142 | P |
|
| Proteome |
| DBTMEE | Gene | Entrez | GV_seqCount | MII_seqCount | Zygote_seqCount | GV_specCount | MII_specCount | Zygote_specCount |
|---|
0019733
(v1.0) | Spg20 | 229285
| 0.6 | 1 | 0 | 0.6 | 1 | 0 |
|
