DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019857
GeneSrp54a
Synonyms54K subunit of signal recognition particle
54kDa
Srp54
Desc.signal recognition particle 54A
LocusNM_011899 chr12:56181483-56216354(+)
NM_011899 chr12:56256327-56365681(+)
DB links


Entrez 24067
MGI 1346087
Ensembl ENSMUSG00000073079
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020443
(v2.0)
Srp54aNM_001100109,NM_001100110,NM_01189924067
3.4926938.50422.55286.885845.815855.687653.3920721.67655.928845.59165
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019857
(v1.0)
Srp54aMaternal RNA0.96462
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020443
(v2.0)
Srp54a24067
0/000/000/002/01.5850/000/00
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020443
(v2.0)
Srp54a24067
0/000/000/002/01.5850/000/00
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020443
(v2.0)
Srp54a24067
29.93977539.92
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020443
(v2.0)
Srp54a24067
6.04565012.09
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019857
(v1.0)
Srp54a_dup1NM_011899_dup124067
1.10090.6227860.2497080.2507030.1712
0019857
(v1.0)
Srp54aNM_001100109,NM_001100110,NM_01189924067
40.02615.71745.142434.021412.38205
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019857
(v1.0)
Srp54a_dup1NM_011899_dup124067
1.15110.2245240.679473
0019857
(v1.0)
Srp54aNM_001100109,NM_001100110,NM_01189924067
41.85091.2773117.148
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019857
(v1.0)
Srp54a_dup1NM_011899_dup124067
1.123580.6165330.901691
0019857
(v1.0)
Srp54aNM_001100109,NM_001100110,NM_01189924067
40.850615.559616.0772
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019857
(v1.0)
Srp54a_dup1NM_011899_dup124067
1.151760.2214490.988944
0019857
(v1.0)
Srp54aNM_001100109,NM_001100110,NM_01189924067
41.87521.2598217.6329
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019857
(v1.0)
Srp54a_dup1NM_011899_dup124067
0.2311910.2420640.35931
0019857
(v1.0)
Srp54aNM_001100109,NM_001100110,NM_01189924067
4.761093.882834.10567
SOLiD_NMNR_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019857
(v1.0)
Srp54a_dup1NM_011899_dup124067
0.570580.00794765
0019857
(v1.0)
Srp54aNM_001100109,NM_001100110,NM_01189924067
15.18572.63213
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019857
(v1.0)
Srp54a_dup1NM_011899_dup124067
0.1288910.133009
0019857
(v1.0)
Srp54aNM_001100109,NM_001100110,NM_01189924067
2.296831.96157
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019857
(v1.0)
8572H3068D05-3Srp5424067
U033956NAP122924-1U,F2.49742.51512.5212.45062.36382.3642.3574
0019857
(v1.0)
18118L0062G06-3Mm.12848Srp5424067
U043277NAP109412-1Srp54;TC903831,TC844364P14576U,F,23.77433.8263.36323.4413.18473.37223.3545
MOE430 N/A
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019857
(v1.0)
A_51_P420901Srp54NM_01189924067
11P0.7610.225P
0019857
(v1.0)
A_52_P279184Srp54NM_01189924067
11P0.1720.059P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019857
(v1.0)
Srp54a24067
320320