DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0020042

Gene

Stra13

Synonyms

Description

stimulated by retinoic acid 13

Locus

NM_016665 UCSC: chr11:120572255-120575081(-) OLP: chr11:120572255-120575081(-)

DB links

Entrez 20892
MGI 894324
Ensembl ENSMUSG00000025144
Vega OTTMUSG00000004086

Feature

protein-coding

GO_BP

7 Terms

GO_MF

1 Terms

GO_CC

6 Terms

KEGG

see DBTMEE:2020632 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0020042 (v1.0)	Stra13	NM_016665	20892	115.367	90.0918	11.0473	19.4112	20.1976

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0020042 (v1.0)	Stra13	NM_016665	20892	120.627	33.2423	98.2921

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0020042 (v1.0)	Stra13	NM_016665	20892	117.744	89.1872	123.314

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0020042 (v1.0)	Stra13	NM_016665	20892	120.697	32.787	135.246

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0020042 (v1.0)	Stra13	NM_016665	20892	10.2281	18.7423	22.5592

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0020042 (v1.0)	Stra13	NM_016665	20892	42.1515	42.0471

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0020042 (v1.0)	Stra13	NM_016665	20892	139.805	111.131

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0020042 (v1.0)	3008	C0501D01-3	Mm.73550	Stra13	20892	U019337	NAP000111-002	Cdc37l;	TC930733,TC927313	Q9CZP7	U,F,2	2.0648	2.2455	2.3255	2.0749	2.1483	2.091	2.2364
0020042 (v1.0)	20054	L0518A12-3	Mm.73550	Stra13	20892	U033731	NAP011917-001	Stra13;	TC899369,TC810367	O08693	U	4.0392	4.1205	4.4126	4.184	4.0494	4.1597	4.0574

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0020042 (v1.0)	1416553_at	Mm.259716	Stra13	NM_016665.2	20892	191.525	288.475	101.875	85.75	133.5

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0020042 (v1.0)	A_52_P124429	Stra13	NM_016665	20892	1	1	P	1.378	0.192	P

N/A