DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0020170
GeneSyce2
Synonyms
Desc.synaptonemal complex central element protein 2
LocusNM_001168246 chr8:87396010-87411345(+)
NR_031759 chr8:87396010-87411345(+)
NM_027954 chr8:87396010-87411345(+)
NM_001168244 chr8:87396157-87411345(+)
DB links


Entrez 71846
MGI 1919096
Ensembl ENSMUSG00000003824
Vega OTTMUSG00000022282
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020765
(v2.0)
Syce2NM_001168244,NM_001168246,NM_027954,NR_03175971846
1224.85299.323338.75410245.652171.6740.934481332.81975.5119209.682
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0020170
(v1.0)
Syce271846
Maternal RNA0.98313
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020765
(v2.0)
Syce271846
791/4620.2624502/4620.0036683/4624.12981852/4623.327355/462-0.9996345/462-1.0174
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020765
(v2.0)
Syce271846
393/1610.7709258/1610.5612610/1615.42031492/1614.52226/161-0.5551129/161-0.9111
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020765
(v2.0)
Syce271846
68.875614148.85
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020765
(v2.0)
Syce271846
19.09649021.22
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020170
(v1.0)
Syce2NM_001168244,NM_001168246,NM_02795471846
271.563206.70465.813128.00810.584411
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020170
(v1.0)
Syce2NM_001168244,NM_001168246,NM_027954,NR_03175971846
402.762269.04589.039838.91320.912095
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0020170
(v1.0)
Syce2NM_001168244,NM_001168246,NM_02795471846
283.944431.834225.519
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0020170
(v1.0)
Syce2NM_001168244,NM_001168246,NM_02795471846
277.157204.629212.893
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0020170
(v1.0)
Syce2NM_001168244,NM_001168246,NM_027954,NR_03175971846
273.237298.012
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0020170
(v1.0)
Syce2NM_001168244,NM_001168246,NM_02795471846
284.109425.919233.494
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0020170
(v1.0)
Syce2NM_001168244,NM_001168246,NM_02795471846
60.932627.04344.666
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0020170
(v1.0)
Syce2NM_001168244,NM_001168246,NM_027954,NR_03175971846
47.254976.4517
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0020170
(v1.0)
Syce2NM_001168244,NM_001168246,NM_02795471846
806.192286.445
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0020170
(v1.0)
Syce2NM_001168244,NM_001168246,NM_02795471846
508.447236.627
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0020170
(v1.0)
11812H3123E01-3Mm.277771700013H19Rik71846
U009578NAP008282-0011700013H19Rik;TC821020,TC821017,TC821016Q9DAC4U,F,24.56984.78974.10663.90273.59483.82373.76
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0020170
(v1.0)
1429270_a_atMm.229128Syce2NM_001168244.1,NM_001168246.1,NM_027954.371846
4008.0753308.752964.75725526.225
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0020170
(v1.0)
A_51_P2735381700013H19RikNM_02795471846
11P0.6230.132P
Proteome N/A