DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0020176
GeneSycp3
SynonymsCor1
Scp3
Desc.synaptonemal complex protein 3
LocusNM_011517 chr10:87922332-87935981(+)
DB links


Entrez 20962
MGI 109542
Ensembl ENSMUSG00000020059
Vega OTTMUSG00000023468
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020771
(v2.0)
Sycp3NM_01151720962
8.461488.1927722.39844.303519.315321.46850.05929249.8286924.648124.7087
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0020176
(v1.0)
Sycp320962
Major ZGA0.951
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020771
(v2.0)
Sycp320962
536/3540.0854365/354-0.071818/354-0.667291/354-0.62396/3540.1732621/3540.2109
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020771
(v2.0)
Sycp320962
275/1600.267167/160-0.054113/160-0.01944/160-0.521336/160-0.0917281/1600.2119
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020771
(v2.0)
Sycp320962
24.695711022.45
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020771
(v2.0)
Sycp320962
6.9025778.96
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020176
(v1.0)
Sycp3NM_01151720962
8.5053315.446632.999513.48230.0454288
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020176
(v1.0)
Sycp3NM_01151720962
73.7877177.387335.704117.0150.108557
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0020176
(v1.0)
Sycp3NM_01151720962
8.89313.0944516.8526
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0020176
(v1.0)
Sycp3NM_01151720962
8.6805415.29157.26567
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0020176
(v1.0)
Sycp3NM_01151720962
8.898273.052067.96874
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0020176
(v1.0)
Sycp3NM_01151720962
30.552413.017717.0535
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0020176
(v1.0)
Sycp3NM_01151720962
25.44633.4675
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0020176
(v1.0)
Sycp3NM_01151720962
7.1423594.3895
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0020176
(v1.0)
Sycp3NM_01151720962
8.6528313.9813
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0020176
(v1.0)
12964H3155H10-3Mm.148209Sycp320962
U011862NAP012381-001Sycp3;TC859790P70281U,F,22.57522.44662.59732.54362.39962.45882.8327
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0020176
(v1.0)
1449534_atMm.297977Sycp3NM_011517.220962
289.025390.5419.15109.45146.725
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0020176
(v1.0)
A_51_P274465Sycp3NM_01151720962
11P0.6110.145P
Proteome N/A