DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021410
GeneTrp53bp1
Synonyms53BP1
p53BP1
Desc.transformation related protein 53 binding protein 1
LocusNM_013735 chr2:121022465-121097122(-)
DB links


Entrez 27223
MGI 1351320
Ensembl ENSMUSG00000043909
Vega OTTMUSG00000015973
Featureprotein-coding
GO(BP)
  •   5 Terms
      DNA repair (GO:0006281)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      response to DNA damage stimulus (GO:0006974)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022038
(v2.0)
Trp53bp1NM_001290830,NM_01373527223
4.797961.033553.599526.389429.26788.2213810.516864.542226.26416.80096
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021410
(v1.0)
Trp53bp127223
Maternal RNA0.98799
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022038
(v2.0)
Trp53bp127223
696/4150.2326520/4150.2087218/4152.6373690/4152.0581129/4150.3688658/4150.0655
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022038
(v2.0)
Trp53bp127223
341/1570.6031234/1570.4571204/1573.8785666/1573.395328/157-0.4166104/157-1.1818
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022038
(v2.0)
Trp53bp127223
55.854111050.78
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022038
(v2.0)
Trp53bp127223
20.79257129.29
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021410
(v1.0)
Trp53bp1NM_01373527223
79.583846.690424.51925.32759.05599
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021410
(v1.0)
Trp53bp1FR194714,NM_01373527223
1403.84740.359181.57213.8691.3943
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021410
(v1.0)
Trp53bp1NM_01373527223
83.21211.8708150.9402
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021410
(v1.0)
Trp53bp1NM_01373527223
81.223346.221659.9926
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021410
(v1.0)
Trp53bp1FR194714,NM_01373527223
324.966423.684
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021410
(v1.0)
Trp53bp1NM_01373527223
83.26051.8451865.7979
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021410
(v1.0)
Trp53bp1NM_01373527223
22.700824.454722.8122
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021410
(v1.0)
Trp53bp1FR194714,NM_01373527223
130.863101.955
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021410
(v1.0)
Trp53bp1NM_01373527223
84.651215.0519
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021410
(v1.0)
Trp53bp1NM_01373527223
76.727469.283
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021410
(v1.0)
2088C0289G10-3Mm.25231Trp53bp127223
U002345NAP097509-0014932441P04Rik;Trp53bp1;TC825890P70399U,F,22.96722.88253.00622.86792.99232.91613.0076
0021410
(v1.0)
3176C0612G09-3U002345NAP034308-14932441P04Rik;Trp53bp1;TC885010P70399U,F,23.39843.38233.68153.42973.38973.40283.3491
0021410
(v1.0)
4427C0933G11-3Mm.41030U023259NAP121777-001Trp53bp1;TC795011P70399U,F,23.79044.03614.48724.32343.9914.17973.885
0021410
(v1.0)
6418H3024H02-3Mm.25231Trp53bp127223
U023259NAP073299-1Trp53bp1;TC871513,TC814980P70399U,F,23.9193.66683.40123.68463.06273.08573.1064
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021410
(v1.0)
1426956_a_atMm.482160Trp53bp1NM_013735.327223
4317.46960.82075.951821.825686.45
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021410
(v1.0)
A_52_P364757Trp53bp1NM_01373527223
11P0.6320.166P
0021410
(v1.0)
A_52_P464437Trp53bp1NM_01373527223
11P1.5010.154P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0021410
(v1.0)
Trp53bp127223
020020