DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021933
GeneUsp39
SynonymsCGI-21
D6Wsu157e
SAD1
Desc.ubiquitin specific peptidase 39
LocusNM_138592 chr6:72268670-72295169(-)
DB links


Entrez 28035
MGI 107622
Ensembl ENSMUSG00000056305
Vega OTTMUSG00000023516
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022580
(v2.0)
Usp39NM_13859228035
12.893872.929237.706235.929733.113819.990123.884347.88729.219621.5228
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021933
(v1.0)
Usp3928035
Maternal RNA0.9927
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022580
(v2.0)
Usp3928035
826/4360.4082532/4360.1705634/4364.10392330/4363.741512/436-3.0237143/436-2.1958
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022580
(v2.0)
Usp3928035
328/1830.3274235/1830.2434399/1834.63661518/1834.36486/183-2.68359/183-2.2037
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022580
(v2.0)
Usp3928035
53.239116332.66
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022580
(v2.0)
Usp3928035
11.38488413.55
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021933
(v1.0)
Usp39NM_13859228035
75.810826.083126.749822.973817.1139
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021933
(v1.0)
Usp39NM_13859228035
307.89275.1656191.83374.160784.8073
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021933
(v1.0)
Usp39NM_13859228035
79.26724.7153828.4572
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021933
(v1.0)
Usp39NM_13859228035
77.372625.821235.4739
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021933
(v1.0)
Usp39NM_13859228035
86.3302246.117
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021933
(v1.0)
Usp39NM_13859228035
79.31324.650838.9065
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021933
(v1.0)
Usp39NM_13859228035
24.766222.182220.239
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021933
(v1.0)
Usp39NM_13859228035
66.955745.9262
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021933
(v1.0)
Usp39NM_13859228035
9.1501216.1154
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021933
(v1.0)
Usp39NM_13859228035
4.425562.07105
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021933
(v1.0)
5697H3005G05-3Mm.27292D6Wsu157e28035
U027470NAP002383-001D6Wsu157e;TC941318Q9CQR1U,F,22.96813.1163.19473.31773.09673.29773.1966
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021933
(v1.0)
1460209_atMm.281900Usp39NM_138592.428035
393.0250208.45191.275221.05
0021933
(v1.0)
1437007_x_atMm.281900Usp39NM_138592.428035
1737.775533.251192.55877.45940.925
Agilent44K N/A
Proteome N/A