DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0022010
GeneVcp
SynonymsAAA ATPase p97
CDC48
p97
p97/VCP
Desc.valosin containing protein
LocusNM_009503 chr4:42992836-43013379(-)
DB links


Entrez 269523
MGI 99919
Ensembl ENSMUSG00000028452
Vega OTTMUSG00000006688
Featureprotein-coding
GO(BP)
  •   18 Terms
      ATP catabolic process (GO:0006200)
      DNA repair (GO:0006281)
      double-strand break repair (GO:0006302)
      ubiquitin-dependent protein catabolic process (GO:0006511)
      transport (GO:0006810)
      ER to Golgi vesicle-mediated transport (GO:0006888)
      activation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0006919)
      response to DNA damage stimulus (GO:0006974)
      protein ubiquitination (GO:0016567)
      protein N-linked glycosylation via asparagine (GO:0018279)
      translesion synthesis (GO:0019985)
      ER-associated protein catabolic process (GO:0030433)
      retrograde protein transport, ER to cytosol (GO:0030970)
      positive regulation of protein complex assembly (GO:0031334)
      positive regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032436)
      positive regulation of protein catabolic process (GO:0045732)
      protein homooligomerization (GO:0051260)
      aggresome assembly (GO:0070842)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Protein processing in endoplasmic reticulum (mmu04141)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022656
(v2.0)
VcpNM_009503269523
115.90843.991319.469660.9686178.999119.17196.77521.3423174.675126.916
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0022010
(v1.0)
Vcp269523
MGA0.93063
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022656
(v2.0)
Vcp269523
615/4010.1039372/401-0.2239170/4012.3285389/4011.28217/401-3.604691/401-2.7188
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022656
(v2.0)
Vcp269523
263/1710.1076146/171-0.342159/1713.4062327/1712.24992/171-3.809840/171-2.6501
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022656
(v2.0)
Vcp269523
56.551711748.33
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022656
(v2.0)
Vcp269523
8.65956413.53
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022010
(v1.0)
VcpNM_009503269523
45.722213.495345.3917124.286139.036
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022010
(v1.0)
VcpNM_009503269523
5.16051.180864.958166.575113.7809
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0022010
(v1.0)
VcpNM_009503269523
47.806842.388914.7237
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0022010
(v1.0)
VcpNM_009503269523
46.664213.359815.8157
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0022010
(v1.0)
VcpNM_009503269523
1.199131.01192
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0022010
(v1.0)
VcpNM_009503269523
47.834641.808317.3461
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0022010
(v1.0)
VcpNM_009503269523
42.0256120.003120.58
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0022010
(v1.0)
VcpNM_009503269523
65.869112.0036
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0022010
(v1.0)
VcpNM_009503269523
15.351324.1735
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0022010
(v1.0)
VcpNM_009503269523
3.229226.68212
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0022010
(v1.0)
18641L0218H01-3Mm.18921Vcp22331
U024980NAP120841-001Tera, VcpTC896983,TC896979,TC896971Q01853U,F,23.48643.25233.72664.43914.01484.37554.1826
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0022010
(v1.0)
1423030_atMm.245976VcpNM_009503.4269523
277.3333.175422.351263.7252291.375
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0022010
(v1.0)
A_51_P109766VcpNM_009503269523
11P1.3380.21P
0022010
(v1.0)
A_52_P120424VcpNM_009503269523
11P0.8520.361P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0022010
(v1.0)
Vcp269523
34532510817198