DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0022437
GeneVti1b
SynonymsVti1-rp1
Desc.vesicle transport through interaction with t-SNAREs 1B
LocusNM_016800 chr12:80257004-80273445(-)
DB links


Entrez 53612
MGI 1855688
Ensembl ENSMUSG00000021124
Vega OTTMUSG00000034944
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      SNARE interactions in vesicular transport (mmu04130)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2023088
(v2.0)
Vti1bNM_01680053612
68.069962.401170.376612.85817.858130.812328.276367.420717.34840.7474
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0022437
(v1.0)
Vti1b53612
Maternal RNA0.97988
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023088
(v2.0)
Vti1b53612
684/4530.0815467/453-0.072186/4531.1825201/4530.158113/453-2.971477/453-3.131
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023088
(v2.0)
Vti1b53612
311/1560.4799179/1560.081781/1562.5651191/1561.60786/156-2.458329/156-2.9625
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023088
(v2.0)
Vti1b53612
47.946310645.23
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023088
(v2.0)
Vti1b53612
17.2277223.93
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022437
(v1.0)
Vti1bNM_01680053612
64.861648.80619.5822312.374719.9962
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022437
(v1.0)
Vti1bNM_01680053612
88.504661.65212.335915.420927.746
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0022437
(v1.0)
Vti1bNM_01680053612
67.818824.893853.2486
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0022437
(v1.0)
Vti1bNM_01680053612
66.197848.316149.9865
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0022437
(v1.0)
Vti1bNM_01680053612
62.33859.172
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0022437
(v1.0)
Vti1bNM_01680053612
67.858224.552954.8235
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0022437
(v1.0)
Vti1bNM_01680053612
8.8716511.948312.0566
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0022437
(v1.0)
Vti1bNM_01680053612
15.126115.6821
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0022437
(v1.0)
Vti1bNM_01680053612
37.3748.48091
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0022437
(v1.0)
Vti1bNM_01680053612
17.08433.05521
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0022437
(v1.0)
12793H3152D11-3Mm.6577Vti1b53612
U034112NAP122255-001Vti1b;TC815586,TC815585O88384U,F,23.09713.31353.12292.97222.86352.96032.8502
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0022437
(v1.0)
1449003_a_atMm.265929Vti1bNM_016800.353612
654.55549.275627.85261.175556.75
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0022437
(v1.0)
A_51_P438692Vti1bNM_01680053612
11P0.3420.0594P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0022437
(v1.0)
Vti1b53612
110110