DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2007553
GeneFoxd3
SynonymsCWH3
Genesis
Hfh2
Descriptionforkhead box D3
LocusNM_010425 UCSC: chr4:99322990-99325362(+) OLP: chr4:99322990-99325362(+)
DB links


Entrez 15221
MGI 1347473
Ensembl ENSMUSG00000067261
Vega OTTMUSG00000007976
Featureprotein-coding
GO_BP
  •   22 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      branching involved in ureteric bud morphogenesis (GO:0001658)
      in utero embryonic development (GO:0001701)
      neural crest cell migration (GO:0001755)
      kidney development (GO:0001822)
      trophectodermal cell differentiation (GO:0001829)
      embryonic placenta development (GO:0001892)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      transcription from RNA polymerase II promoter (GO:0006366)
      multicellular organismal development (GO:0007275)
      pattern specification process (GO:0007389)
      peripheral nervous system development (GO:0007422)
      melanocyte differentiation (GO:0030318)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      enteric nervous system development (GO:0048484)
      sympathetic nervous system development (GO:0048485)
      axon extension involved in axon guidance (GO:0048846)
      lateral line nerve glial cell development (GO:0048937)
      iridophore differentiation (GO:0050935)
      regulation of sequence-specific DNA binding transcription factor activity (GO:0051090)
      cartilage development (GO:0051216)
GO_MF
  •   10 Terms
      RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977)
      RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription (GO:0001227)
      DNA binding (GO:0003677)
      double-stranded DNA binding (GO:0003690)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity (GO:0003705)
      transcription factor binding (GO:0008134)
      DNA binding, bending (GO:0008301)
      sequence-specific DNA binding (GO:0043565)
      transcription regulatory region DNA binding (GO:0044212)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2007553
(v2.0)		Foxd3NM_01042515221
0.0919075000.1711603.94237000.05982396.29086
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2007553
(v2.0)		Foxd315221
1173/3811.1075820/3810.9878110/3811.7766880/3812.53111080/3813.54663785/3812.7099
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2007553
(v2.0)		Foxd315221
605/1391.6021324/1391.099268/1392.4699430/1392.938300/1393.12991375/1392.6982
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2007553
(v2.0)		Foxd315221
19.713685.36
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2007553
(v2.0)		Foxd315221
8.64171705.08
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A