DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2009795
GeneHcfc1
SynonymsHCF-1
HCF1
VP16 accessory protein
Descriptionhost cell factor C1
LocusNM_008224 UCSC: chrX:71188131-71211696(-) OLP: chrX:71188131-71211696(-)
DB links


Entrez 15161
MGI 105942
Ensembl ENSMUSG00000031386
Vega OTTMUSG00000017652
Featureprotein-coding
GO_BP
  •   14 Terms
GO_MF
  •   8 Terms
      RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (GO:0001205)
      chromatin binding (GO:0003682)
      transcription coactivator activity (GO:0003713)
      protein binding (GO:0005515)
      identical protein binding (GO:0042802)
      histone acetyltransferase activity (H4-K5 specific) (GO:0043995)
      histone acetyltransferase activity (H4-K8 specific) (GO:0043996)
      histone acetyltransferase activity (H4-K16 specific) (GO:0046972)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2009795
(v2.0)		Hcfc1NM_00822415161
12.34264.161835.151347.593839.9926726.36428.992778.0108913.732324.9989
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2009795
(v2.0)		Hcfc115161
428/2480.2734256/248-0.0701267/2483.644760/2482.93438/248-2.750590/248-2.0434
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2009795
(v2.0)		Hcfc115161
252/1100.678299/110-0.2656261/1104.7022720/1104.01111/110-3.777220/110-2.9665
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2009795
(v2.0)		Hcfc115161
31.748615320.75
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2009795
(v2.0)		Hcfc115161
11.00031318.4
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0009912
(v1.0)		3207C0619D04-3Mm.57203Hcfc115161
Hcfc12.51972.57932.72362.63232.42722.58392.4852
MOE430 N/A
Agilent44K N/A
Proteome N/A