DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2010013
GeneHmga1
SynonymsHMG-I(Y)
Hmga1a
Hmga1b
Hmgi
HMGI(Y)
Hmgiy
HMGY
Descriptionhigh mobility group AT-hook 1
LocusNM_001166535 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166540 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166539 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166536 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166546 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166545 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166544 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166543 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166542 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001166541 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001039356 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_001025427 UCSC: chr17:27693519-27700617(+) OLP: chr17:27693519-27700617(+)
NM_016660 UCSC: chr17:27693549-27700617(+) OLP: chr17:27693549-27700617(+)
NM_001166537 UCSC: chr17:27693549-27700617(+) OLP: chr17:27693549-27700617(+)
DB links


Entrez 15361
MGI 96160
Ensembl ENSMUSG00000046711
Vega OTTMUSG00000028935
Featureprotein-coding
GO_BP
  •   3 Terms
      transcription from RNA polymerase II promoter (GO:0006366)
      spermatogenesis (GO:0007283)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
GO_MF
  •   10 Terms
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (GO:0001077)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906)
      transcription factor binding (GO:0008134)
      enzyme binding (GO:0019899)
      ligand-dependent nuclear receptor transcription coactivator activity (GO:0030374)
      retinoic acid receptor binding (GO:0042974)
      peroxisome proliferator activated receptor binding (GO:0042975)
      retinoid X receptor binding (GO:0046965)
      5'-deoxyribose-5-phosphate lyase activity (GO:0051575)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010013
(v2.0)		Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
111.05468.525784.37488.458518.53562616.222147.605127.57910.9543757.474
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2010013
(v2.0)		Hmga115361
1006/4650.5995440/465-0.1955162/4652.0515449/4651.276233/465-1.7287283/465-1.3112
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2010013
(v2.0)		Hmga115361
602/1611.3844239/1610.4513141/1613.3151382/1612.55929/161-1.98899/161-1.2879
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2010013
(v2.0)		Hmga115361
89.492325335.37
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2010013
(v2.0)		Hmga115361
11.22641626.93
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010130
(v1.0)		6605H3029B11-3Mm.4438Hmga115361
U017728NAP120086-1Hmga1;TC920000,TC919997,TC799437P17095U,F3.26943.33723.4773.41783.18073.34823.1933
MOE430 N/A
Agilent44K N/A
Proteome N/A