DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2010971
GeneKdm5c
SynonymsJarid1c
Smcx
Descriptionlysine (K)-specific demethylase 5C
LocusNM_013668 UCSC: chrX:148667770-148713642(+) OLP: chrX:148667770-148713642(+)
DB links


Entrez 20591
MGI 99781
Ensembl ENSMUSG00000025332
Vega OTTMUSG00000017219
Featureprotein-coding
GO_BP
  •   6 Terms
GO_MF
  •   16 Terms
      sulfonate dioxygenase activity (GO:0000907)
      RNA polymerase II transcription factor binding (GO:0001085)
      DNA binding (GO:0003677)
      zinc ion binding (GO:0008270)
      oxidoreductase activity (GO:0016491)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
      2,4-dichlorophenoxyacetate alpha-ketoglutarate dioxygenase activity (GO:0018602)
      procollagen-proline dioxygenase activity (GO:0019798)
      histone demethylase activity (H3-K4 specific) (GO:0032453)
      hypophosphite dioxygenase activity (GO:0034792)
      identical protein binding (GO:0042802)
      DNA-N1-methyladenine dioxygenase activity (GO:0043734)
      metal ion binding (GO:0046872)
      dioxygenase activity (GO:0051213)
      C-19 gibberellin 2-beta-dioxygenase activity (GO:0052634)
      C-20 gibberellin 2-beta-dioxygenase activity (GO:0052635)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010971
(v2.0)		Kdm5cNM_01366820591
5.553138.0596612.973813.08116.96598.9760721.874914.287716.96397.91417
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2010971
(v2.0)		Kdm5c20591
341/1890.337258/1890.3312228/1893.7883653/1893.103131/189-0.5359139/189-1.0346
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2010971
(v2.0)		Kdm5c20591
182/800.6664131/800.5893218/804.8502608/804.2159/80-1.015429/80-2.0078
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2010971
(v2.0)		Kdm5c20591
41.276810340.07
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2010971
(v2.0)		Kdm5c20591
5.4237658.34
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A