DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2014637
GeneNr5a2
SynonymsD1Ertd308e
Ftf
LRH-1
UF2-H3B
Descriptionnuclear receptor subfamily 5, group A, member 2
LocusNM_001159769 UCSC: chr1:138740161-138850207(-) OLP: chr1:138740161-138850207(-)
NM_030676 UCSC: chr1:138740161-138857025(-) OLP: chr1:138740161-138857025(-)
DB links


Entrez 26424
MGI 1346834
Ensembl ENSMUSG00000026398
Featureprotein-coding
GO_BP
  •   12 Terms
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      regulation of transcription from RNA polymerase II promoter (GO:0006357)
      transcription from RNA polymerase II promoter (GO:0006366)
      bile acid metabolic process (GO:0008206)
      intracellular receptor signaling pathway (GO:0030522)
      regulation of cell proliferation (GO:0042127)
      cholesterol homeostasis (GO:0042632)
      steroid hormone mediated signaling pathway (GO:0043401)
      positive regulation of viral genome replication (GO:0045070)
      positive regulation of transcription, DNA-templated (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
GO_MF
  •   13 Terms
      RNA polymerase II core promoter proximal region sequence-specific DNA binding (GO:0000978)
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (GO:0001077)
      DNA binding (GO:0003677)
      double-stranded DNA binding (GO:0003690)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      steroid hormone receptor activity (GO:0003707)
      ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity (GO:0004879)
      phospholipid binding (GO:0005543)
      zinc ion binding (GO:0008270)
      lipid binding (GO:0008289)
      sequence-specific DNA binding (GO:0043565)
      transcription regulatory region DNA binding (GO:0044212)
      metal ion binding (GO:0046872)
GO_CC
KEGG
  •   1 Terms
      Maturity onset diabetes of the young (mmu04950)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014637
(v2.0)		Nr5a2NM_001159769,NM_03067626424
017.072523.7405117.853211.0610.7720.11178322.9648166.7534.74137
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2014637
(v2.0)		Nr5a226424
803/4890.2024516/489-0.038656/4890.4649433/4891.1517690/4892.54443196/4892.1067
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2014637
(v2.0)		Nr5a226424
332/2100.1473208/210-0.129438/2101.0912232/2101.464327/2102.67281377/2102.1084
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2014637
(v2.0)		Nr5a226424
43.72517425.13
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2014637
(v2.0)		Nr5a226424
10.19247613.41
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0014180
(v1.0)		7397H3047D07-3Nr5a226424
U021824NAP097920-001Nr5a2;TC910900P45448U,F,22.79222.99313.19523.59043.28853.43473.0768
0014180
(v1.0)		9889H3087G01-3Nr5a226424
U021824NAP097920-001Nr5a2;TC910900,TC910899P45448U,F,22.48762.39233.16043.67733.333.382.9444
MOE430 N/A
Agilent44K N/A
Proteome N/A