DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2016163
GeneP4ha1
SynonymsP4ha
Descriptionprocollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
LocusNM_011030 UCSC: chr10:58786044-58836052(+) OLP: chr10:58786044-58836052(+)
DB links


Entrez 18451
MGI 97463
Ensembl ENSMUSG00000019916
Vega OTTMUSG00000034134
Featureprotein-coding
GO_BP
  •   3 Terms
      peptidyl-proline hydroxylation to 4-hydroxy-L-proline (GO:0018401)
      collagen fibril organization (GO:0030199)
      oxidation-reduction process (GO:0055114)
GO_MF
  •   9 Terms
      procollagen-proline 4-dioxygenase activity (GO:0004656)
      iron ion binding (GO:0005506)
      oxidoreductase activity (GO:0016491)
      oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
      L-ascorbic acid binding (GO:0031418)
      metal ion binding (GO:0046872)
      dioxygenase activity (GO:0051213)
GO_CC
KEGG
  •   2 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016163
(v2.0)		P4ha1NM_01103018451
14.829328.241719.65635.192388.7690539.087743.054416.33937.7104543.1888
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016163
(v2.0)		P4ha118451
600/3920.101433/3920.0272123/3921.8966424/3921.438798/3920.0572545/392-0.1236
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016163
(v2.0)		P4ha118451
307/1720.3213167/172-0.157866/1722.1425183/1721.407634/172-0.2737162/172-0.6807
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016163
(v2.0)		P4ha118451
47.866314133.95
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016163
(v2.0)		P4ha118451
11.512210211.29
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015696
(v1.0)		11551H3118E07-5P4ha118451
U011546NAP004404-001P4ha1;TC881380,TC806364Q60715U,F2.48882.78062.73312.59682.30792.47192.3608
0015696
(v1.0)		17930L0033G06-3Mm.2212P4ha118451
U011546NAP004404-001P4ha1;TC881380,TC806364Q60715U,F2.6262.82832.92892.82282.59272.86272.5547
MOE430 N/A
Agilent44K N/A
Proteome N/A