DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018679
GeneRrn3
SynonymsTIF-1A
DescriptionRRN3 RNA polymerase I transcription factor homolog (yeast)
LocusNM_001039521 UCSC: chr16:13780792-13814934(+) OLP: chr16:13780792-13814934(+)
DB links


Entrez 106298
MGI 1925255
Ensembl ENSMUSG00000022682
Featureprotein-coding
GO_BP
  •   13 Terms
      in utero embryonic development (GO:0001701)
      transcription, DNA-templated (GO:0006351)
      DNA-templated transcription, initiation (GO:0006352)
      regulation of transcription, DNA-templated (GO:0006355)
      transcription initiation from RNA polymerase I promoter (GO:0006361)
      nucleolus organization (GO:0007000)
      cytoplasm organization (GO:0007028)
      cell proliferation (GO:0008283)
      ribosome biogenesis (GO:0042254)
      positive regulation of transcription, DNA-templated (GO:0045893)
      homeostasis of number of cells (GO:0048872)
      negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator (GO:1902254)
      regulation of DNA-templated transcription, initiation (GO:2000142)
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018679
(v2.0)		Rrn3NM_001039521106298
10.486731.176656.4576113.5110.98220.795111.913761.437280.474227.7396
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018679
(v2.0)		Rrn3106298
565/3920.0145371/392-0.1951113/3921.7753309/3920.983535/392-1.4022198/392-1.5774
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018679
(v2.0)		Rrn3106298
291/211-0.0488186/211-0.2966103/2112.4997274/2111.69645/211-3.106562/211-2.3382
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018679
(v2.0)		Rrn3106298
57.369211251.22
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018679
(v2.0)		Rrn3106298
26.43568033.04
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A