DBTMEE:2019875
| Gene | Smarcd2 |
| Synonyms | Baf60b |
| Description | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 |
| Locus | NM_031878 UCSC: chr11:106124485-106128946(-) OLP: chr11:106124485-106128946(-)
NM_001130187 UCSC: chr11:106124485-106134286(-) OLP: chr11:106124485-106134286(-)
|
| DB links |
Entrez 83796
MGI 1933621
Ensembl ENSMUSG00000078619
Vega OTTMUSG00000003421
|
| Feature | protein-coding |
| GO_BP |
-
 6 Terms
|
| GO_MF |
-
3 Terms
RNA polymerase II core promoter proximal region sequence-specific DNA binding (GO:0000978)
RNA polymerase II distal enhancer sequence-specific DNA binding (GO:0000980)
nucleosomal DNA binding (GO:0031492)
|
| GO_CC |
-
4 Terms
|
| KEGG | |
| Ver2_FPKM |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | ESC_FPKM | MEF_FPKM | p1C_FPKM | p4C_FPKM | iPSC_FPKM |
|---|
2019875
(v2.0) | Smarcd2 | NM_001130187,NM_031878 | 83796
| 30.1919 | 100.957 | 80.1247 | 75.4234 | 65.842 | 39.0927 | 30.5273 | 67.5569 | 60.4153 | 33.6303 |
|
| SPR_Histone_Erkek_5KaroundTSS |
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2019875
(v2.0) | Smarcd2 | 83796
| 847/506 | 0.23 | 434/506 | -0.3369 | 291/506 | 2.7737 | 763/506 | 1.9186 | 20/506 | -2.5447 | 219/506 | -1.8005 |
|
| SPR_Histone_Erkek_2KaroundTSS |
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2019875
(v2.0) | Smarcd2 | 83796
| 420/195 | 0.5916 | 200/195 | -0.0793 | 174/195 | 3.3579 | 391/195 | 2.3202 | 3/195 | -3.58 | 55/195 | -2.3935 |
|
| SPR_Methy_Kobayashi_5KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2019875
(v2.0) | Smarcd2 | 83796
| 105.331 | 138 | 76.33 |
|
| SPR_Methy_Kobayashi_2KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2019875
(v2.0) | Smarcd2 | 83796
| 49.3913 | 54 | 91.47 |
|
| SOLiD_OocyteTo4C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno1C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno4C_FPKM_gene_guided |
N/A |
| Illumina_Oo_2C_FPKM_gene_guided |
N/A |
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
N/A |
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0019317
(v1.0) | 5460 | BE553367.1 | Mm.21772 | Smarcd2 | 83796
| U033539 | NAP015994-001 | Smarcd2; | TC930185,TC930184 | Q99JR8 | U,F,2 | 3.9395 | 4.0938 | 4.4071 | 4.1875 | 4.0413 | 4.1725 | 4.0471 |
0019317
(v1.0) | 11553 | H3118F03-3 | Mm.21772 | Smarcd2 | 83796
| U033539 | NAP015994-001 | Smarcd2; | TC930185,TC930184 | Q99JR8 | U,F,2 | 4.2926 | 4.3576 | 3.8808 | 4.3995 | 4.2163 | 4.2699 | 4.01 |
|
| MOE430 |
N/A |
| Agilent44K |
N/A |
| Proteome |
N/A |
