DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2020168

Gene

Sod2

Synonyms

manganese SOD
manganese superoxide dismutase
MnSOD
Sod-2

Description

superoxide dismutase 2, mitochondrial

Locus

NM_013671 UCSC: chr17:13200705-13210985(+) OLP: chr17:13200705-13210985(+)

DB links

Entrez 20656
MGI 98352
Ensembl ENSMUSG00000006818

Feature

protein-coding

GO_BP

51 Terms

GO_MF

8 Terms

GO_CC

6 Terms

KEGG

2 Terms

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2020168 (v2.0)	Sod2	NM_013671	20656	37.4012	8.62192	9.55721	29.4257	37.7481	36.6874	22.4684	10.8571	37.8374	33.289

SPR_Histone_Erkek_5KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2020168 (v2.0)	Sod2	20656	493/302	0.1936	338/302	0.0461	185/302	2.845	403/302	1.7391	23/302	-1.6154	180/302	-1.3386

SPR_Histone_Erkek_2KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2020168 (v2.0)	Sod2	20656	271/138	0.458	147/138	-0.0249	181/138	3.8787	398/138	2.8369	6/138	-2.2863	55/138	-1.8977

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2020168 (v2.0)	Sod2	20656	43.3423	97	44.68

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2020168 (v2.0)	Sod2	20656	9.9677	62	16.08

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0019591 (v1.0)	2691	C0352F05-3	Mm.2597	Sod2	20656	U017505	NAP097815-001	Sod2;	TC919199	P09671	U,F,2	3.871	3.9151	3.7771	4.097	3.8062	4.1669	4.343
0019591 (v1.0)	3472	C0665F12-3	Mm.2597	Sod2	20656	U043559	NAP019434-001		TC843349	P09671	U,F,2	2.4745	2.5201	2.656	2.9991	2.7261	2.9726	2.879

N/A

N/A

N/A