DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2020174

Gene

Son

Synonyms

Description

Son DNA binding protein

Locus

NM_019973 UCSC: chr16:91648069-91663563(+) OLP: chr16:91648069-91663563(+)
NM_178880 UCSC: chr16:91648069-91679437(+) OLP: chr16:91648069-91679437(+)

DB links

Entrez 20658
MGI 98353
Ensembl ENSMUSG00000022961
Vega OTTMUSG00000028340

Feature

protein-coding

GO_BP

10 Terms

GO_MF

6 Terms

GO_CC

2 Terms

KEGG

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2020174 (v2.0)	Son	NM_019973,NM_178880	20658	22.3583	58.9507	70.5214	99.2696	114.413	28.2199	70.6001	61.9326	108.833	24.7906

SPR_Histone_Erkek_5KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2020174 (v2.0)	Son	20658	679/323	0.5576	494/323	0.4955	315/323	3.5163	930/323	2.8473	7/323	-3.2961	70/323	-2.779

SPR_Histone_Erkek_2KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2020174 (v2.0)	Son	20658	379/120	1.1398	247/120	0.9196	300/120	4.7888	836/120	4.1035	3/120	-2.8983	36/120	-2.2888

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2020174 (v2.0)	Son	20658	53.0177	179	29.62

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2020174 (v2.0)	Son	20658	11.1083	133	8.35

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0019598 (v1.0)	6817	H3035B06-3	Mm.46401	Son	20658	U043546	NAP000348-002	Son;	TC820508,TC815467	Q9QX47	U,F,2	2.9664	2.9956	2.8545	2.9137	2.3731	2.8956	2.8778
0019598 (v1.0)	14681	J0747F08-3	Mm.46401	Son	20658	U043546	NAP000348-002	Son;	TC900912,TC820509,TC815467	Q9QX47	U,F,2	3.777	3.7827	3.5285	3.8143	3.2348	3.5262	3.3916
0019598 (v1.0)	15750	K0236F11-3	Mm.46401	Son	20658	U043546	NAP107192-1	Son;	TC815468,TC815467	Q9QX47	U,F,2	2.8527	2.6445	2.7915	2.6989	2.7779	2.7662	2.7637

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