DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2022178
GeneTtc3
SynonymsD16Ium21
D16Ium21e
TPRD
Descriptiontetratricopeptide repeat domain 3
LocusNM_009441 UCSC: chr16:94592346-94690828(+) OLP: chr16:94592346-94690828(+)
DB links


Entrez 22129
MGI 1276539
Ensembl ENSMUSG00000040785
Vega OTTMUSG00000030295
Featureprotein-coding
GO_BP
  •   4 Terms
      ubiquitin-dependent protein catabolic process (GO:0006511)
      negative regulation of cell morphogenesis involved in differentiation (GO:0010771)
      negative regulation of neuron differentiation (GO:0045665)
      protein K48-linked ubiquitination (GO:0070936)
GO_MF
  •   15 Terms
      ubiquitin-protein transferase activity (GO:0004842)
      protein binding (GO:0005515)
      zinc ion binding (GO:0008270)
      UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
      ligase activity (GO:0016874)
      ribosomal S6-glutamic acid ligase activity (GO:0018169)
      coenzyme F420-0 gamma-glutamyl ligase activity (GO:0043773)
      coenzyme F420-2 alpha-glutamyl ligase activity (GO:0043774)
      metal ion binding (GO:0046872)
      protein-glycine ligase activity (GO:0070735)
      protein-glycine ligase activity, initiating (GO:0070736)
      protein-glycine ligase activity, elongating (GO:0070737)
      tubulin-glycine ligase activity (GO:0070738)
      protein-glutamic acid ligase activity (GO:0070739)
      tubulin-glutamic acid ligase activity (GO:0070740)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022178
(v2.0)		Ttc3NM_00944122129
8.451714.5265813.232116.143912.947412.72335.437711.43914.033111.4105
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2022178
(v2.0)		Ttc322129
677/3570.4094466/3570.2675164/3572.4394354/3571.31339/357-1.1168198/357-1.4428
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2022178
(v2.0)		Ttc322129
382/1580.7571199/1580.2154160/1583.5215340/1582.418317/158-1.113683/158-1.5111
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2022178
(v2.0)		Ttc322129
40.84215027.23
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2022178
(v2.0)		Ttc322129
8.01211156.97
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021547
(v1.0)		11708H3121G11-3Mm.3679Ttc322129
U,F,22.62912.83482.8392.68212.27052.44332.5086
0021547
(v1.0)		16032K0322C08-3Mm.3679Ttc322129
TC927128,TC924570,TC924563U,F,22.76472.96882.60942.74572.45392.48442.6117
0021547
(v1.0)		21185L0838E04-3Mm.213408Ttc322129
TC927128,TC927127,TC927126,TC924573,TC924570,TC924563U,F,22.46752.56162.00432.33912.59522.49722.5007
MOE430 N/A
Agilent44K N/A
Proteome N/A