DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2002893
GeneAtf1
Synonyms
Descriptionactivating transcription factor 1
LocusNM_007497 UCSC: chr15:100058290-100091679(+) OLP: chr15:100058290-100091679(+)
DB links


Entrez 11908
MGI 1298366
Ensembl ENSMUSG00000023027
Vega OTTMUSG00000036768
Featureprotein-coding
GO_BP
  •   7 Terms
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      transcription from RNA polymerase II promoter (GO:0006366)
      positive regulation of neuron projection development (GO:0010976)
      cellular protein complex assembly (GO:0043623)
      positive regulation of DNA replication (GO:0045740)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
GO_MF
  •   8 Terms
      RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977)
      RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (GO:0001228)
      DNA binding (GO:0003677)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity (GO:0003705)
      protein complex binding (GO:0032403)
      sequence-specific DNA binding (GO:0043565)
      protein heterodimerization activity (GO:0046982)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002893
(v2.0)		Atf1NM_00749711908
33.489935.186554.217172.380291.782219.71822.965862.984673.096323.0213
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2002893
(v2.0)		Atf111908
650/4520.0113422/452-0.2148135/4521.8301389/4521.110414/452-2.8687199/452-1.7752
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2002893
(v2.0)		Atf111908
295/1640.3324164/164-0.1155120/1643.0594334/1642.33983/164-3.335955/164-2.1451
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2002893
(v2.0)		Atf111908
67.115810762.73
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2002893
(v2.0)		Atf111908
16.66635331.45
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0002989
(v1.0)		16253K0347H05-3Mm.676Atf111908
U016666NAP095407-001TC943039,TC943037,TC854383P81269U,F,23.89963.76843.3553.55873.39683.33523.3656
MOE430 N/A
Agilent44K N/A
Proteome N/A