DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2014638
GeneNr6a1
SynonymsGcnf
NCNF
Descriptionnuclear receptor subfamily 6, group A, member 1
LocusNM_010264 UCSC: chr2:38578894-38781981(-) OLP: chr2:38578894-38781981(-)
NM_001159549 UCSC: chr2:38578894-38640035(-) OLP: chr2:38578894-38640035(-)
NM_001159548 UCSC: chr2:38578894-38640035(-) OLP: chr2:38578894-38640035(-)
DB links


Entrez 14536
MGI 1352459
Ensembl ENSMUSG00000063972
Vega OTTMUSG00000012347
Featureprotein-coding
GO_BP
  •   7 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      multicellular organismal development (GO:0007275)
      spermatogenesis (GO:0007283)
      cell differentiation (GO:0030154)
      steroid hormone mediated signaling pathway (GO:0043401)
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014638
(v2.0)		Nr6a1NM_001159548,NM_001159549,NM_01026414536
11.061250.552391.482867.399517.492211.1451.5449888.460120.462416.5239
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2014638
(v2.0)		Nr6a114536
466/328-0.0062426/3280.260211/328-1.223944/328-1.5454189/3281.2519968/3280.9598
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2014638
(v2.0)		Nr6a114536
149/142-0.4398169/1420.1346/142-0.859620/142-1.4515105/1421.5943455/1421.0753
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2014638
(v2.0)		Nr6a114536
52.96835891.32
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2014638
(v2.0)		Nr6a114536
26.18322990.29
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0014181
(v1.0)		5307U14666.1Mm.4577Nr6a114536
U022570NAP009556-001Nr6a1;TC911084Q64249U,F,23.47613.46083.56923.44853.45683.44783.3763
0014181
(v1.0)		6529H3026F12-3Mm.4577Nr6a114536
U022570NAP047304-1Nr6a1;TC832301Q64249U,F,24.14384.19243.37463.45983.40883.58053.5042
MOE430 N/A
Agilent44K N/A
Proteome N/A