DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018030
GeneRb1
SynonymspRb
Rb
Rb-1
Descriptionretinoblastoma 1
LocusNM_009029 UCSC: chr14:73595309-73725598(-) OLP: chr14:73595309-73725598(-)
DB links


Entrez 19645
MGI 97874
Ensembl ENSMUSG00000022105
Vega OTTMUSG00000036132
Featureprotein-coding
GO_BP
  •   40 Terms
      G1/S transition of mitotic cell cycle (GO:0000082)
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      regulation of transcription from RNA polymerase II promoter (GO:0006357)
      negative regulation of protein kinase activity (GO:0006469)
      cell cycle (GO:0007049)
      cell cycle arrest (GO:0007050)
      regulation of mitotic cell cycle (GO:0007346)
      negative regulation of cell proliferation (GO:0008285)
      chromatin modification (GO:0016568)
      neuron differentiation (GO:0030182)
      sister chromatid biorientation (GO:0031134)
      neuron projection development (GO:0031175)
      maintenance of mitotic sister chromatid cohesion (GO:0034088)
      glial cell apoptotic process (GO:0034349)
      skeletal muscle cell differentiation (GO:0035914)
      neuron maturation (GO:0042551)
      negative regulation of apoptotic process (GO:0043066)
      enucleate erythrocyte differentiation (GO:0043353)
      regulation of lipid kinase activity (GO:0043550)
      myoblast differentiation (GO:0045445)
      positive regulation of macrophage differentiation (GO:0045651)
      negative regulation of cell cycle (GO:0045786)
      positive regulation of mitotic metaphase/anaphase transition (GO:0045842)
      negative regulation of smoothened signaling pathway (GO:0045879)
      negative regulation of transcription, DNA-templated (GO:0045892)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      digestive tract development (GO:0048565)
      cell morphogenesis involved in neuron differentiation (GO:0048667)
      negative regulation of epithelial cell proliferation (GO:0050680)
      striated muscle cell differentiation (GO:0051146)
      cell division (GO:0051301)
      neuron apoptotic process (GO:0051402)
      regulation of cell cycle (GO:0051726)
      protein localization to chromosome, centromeric region (GO:0071459)
      regulation of cohesin localization to chromatin (GO:0071922)
      negative regulation of transcription involved in G1/S transition of mitotic cell cycle (GO:0071930)
      hepatocyte apoptotic process (GO:0097284)
      negative regulation of G1/S transition of mitotic cell cycle (GO:2000134)
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018030
(v2.0)		Rb1NM_00902919645
4.7135828.666247.617627.16086.129592.837473.2270732.80375.574732.8582
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018030
(v2.0)		Rb119645
640/3510.3529496/3510.3817113/3511.9296259/3510.88819/351-2.0926151/351-1.806
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018030
(v2.0)		Rb119645
371/1310.9836261/1310.8733109/1313.2212242/1312.19525/131-2.435860/131-1.7009
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018030
(v2.0)		Rb119645
45.261513034.82
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018030
(v2.0)		Rb119645
9.129110.02
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017517
(v1.0)		4030C0912B09-3Mm.304Rb119645
U035762NAP096194-001Rb1;TC905115P13405U,F,24.16244.2233.14123.13222.66022.58732.7484
0017517
(v1.0)		9430H3081A11-3Mm.304Rb119645
U035762NAP037111-1Rb1;TC905114P13405U,F,22.2972.37912.4122.32462.31912.17152.2372
MOE430 N/A
Agilent44K N/A
Proteome N/A