DBTMEE:2018034
| Gene | Rbbp4 |
| Synonyms | CAF-1 p48 subunit |
| Description | retinoblastoma binding protein 4 |
| Locus | NM_009030 UCSC: chr4:128984344-129012614(-) OLP: chr4:128984344-129012614(-)
|
| DB links |
Entrez 19646
MGI 1194912
Ensembl ENSMUSG00000057236
Vega OTTMUSG00000009619
|
| Feature | protein-coding |
| GO_BP |
-
 11 Terms
|
| GO_MF |
-
6 Terms
RNA polymerase II core promoter proximal region sequence-specific DNA binding (GO:0000978)
RNA polymerase II distal enhancer sequence-specific DNA binding (GO:0000980)
protein binding (GO:0005515)
DNA-dependent ATPase activity (GO:0008094)
nucleosomal DNA binding (GO:0031492)
histone deacetylase binding (GO:0042826)
|
| GO_CC |
-
8 Terms
|
| KEGG | |
| Ver2_FPKM |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | ESC_FPKM | MEF_FPKM | p1C_FPKM | p4C_FPKM | iPSC_FPKM |
|---|
2018034
(v2.0) | Rbbp4 | NM_009030 | 19646
| 28.6566 | 34.3652 | 26.0128 | 45.6558 | 47.288 | 115.679 | 53.3364 | 18.7279 | 46.7122 | 124.339 |
|
| SPR_Histone_Erkek_5KaroundTSS |
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2018034
(v2.0) | Rbbp4 | 19646
| 762/380 | 0.4899 | 434/380 | 0.0753 | 255/380 | 2.9859 | 642/380 | 2.0806 | 18/380 | -2.2799 | 107/380 | -2.4112 |
|
| SPR_Histone_Erkek_2KaroundTSS |
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2018034
(v2.0) | Rbbp4 | 19646
| 342/127 | 0.911 | 178/127 | 0.3683 | 239/127 | 4.3876 | 573/127 | 3.4792 | 10/127 | -1.518 | 50/127 | -1.9124 |
|
| SPR_Methy_Kobayashi_5KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2018034
(v2.0) | Rbbp4 | 19646
| 60.4395 | 157 | 38.5 |
|
| SPR_Methy_Kobayashi_2KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2018034
(v2.0) | Rbbp4 | 19646
| 20.8167 | 117 | 17.79 |
|
| SOLiD_OocyteTo4C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno1C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno4C_FPKM_gene_guided |
N/A |
| Illumina_Oo_2C_FPKM_gene_guided |
N/A |
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
N/A |
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0017520
(v1.0) | 14800 | J0820F10-3 | Mm.12145 | Rbbp4 | 19646
| U025550 | NAP056544-1 | Rbbp4; | TC897680,TC897679,TC897675,TC897674,TC897673,TC897671,TC897670,TC897669,TC897668,TC897667 | Q60972 | U,F,2 | 3.94 | 3.8931 | 3.7512 | 3.9145 | 4.3407 | 4.2911 | 4.3547 |
|
| MOE430 |
N/A |
| Agilent44K |
N/A |
| Proteome |
N/A |
