DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2018542

Gene

Rpl13a

Synonyms

Tstap198-7
tum-antigen
tum-transplantation antigen P198

Description

ribosomal protein L13A

Locus

NM_009438 UCSC: chr7:52380933-52384115(-) OLP: chr7:52380933-52384115(-)

DB links

Entrez 22121
MGI 1351455
Ensembl ENSMUSG00000074129
Vega OTTMUSG00000016498

Feature

protein-coding

GO_BP

9 Terms

GO_MF

3 Terms

GO_CC

6 Terms

KEGG

1 Terms

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2018542 (v2.0)	Rpl13a	NM_009438,NR_001277,NR_039581	22121	1300.79	11446.9	55112	112525	235204	8283.47	306804	149840	199389	9925.96

SPR_Histone_Erkek_5KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2018542 (v2.0)	Rpl13a	22121	800/462	0.2787	411/462	-0.2843	909/462	4.5416	2218/462	3.5874	28/462	-1.9489	214/462	-1.7026

SPR_Histone_Erkek_2KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2018542 (v2.0)	Rpl13a	22121	357/194	0.3654	167/194	-0.3305	374/194	4.4644	972/194	3.6391	9/194	-2.2508	71/194	-2.0265

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2018542 (v2.0)	Rpl13a	22121	83.2302	259	32.14

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2018542 (v2.0)	Rpl13a	22121	26.6104	119	22.36

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0018015 (v1.0)	3456	C0663C12-3	Mm.13020	Rpl13a	22121							1.9352	2.4074	2.0949	2.4151	2.4018	2.43	2.3324
0018015 (v1.0)	18860	L0229G12-3	Mm.13020	Rpl13a	22121	U028516	NAP093279-001		TC798115,TC798111,TC798110	P19253	U,F,2	3.5087	3.4683	3.6265	4.2838	4.4	4.285	4.2918

N/A

N/A

N/A