DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018987
GeneSdc1
SynonymsCD138
syn-1
Synd
Synd1
Descriptionsyndecan 1
LocusNM_011519 UCSC: chr12:8778202-8800493(+) OLP: chr12:8778202-8800493(+)
DB links


Entrez 20969
MGI 1349162
Ensembl ENSMUSG00000020592
Vega OTTMUSG00000033390
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018987
(v2.0)		Sdc1NM_01151920969
55.926657.079527.808217.672511.761320.396656.222729.459414.618924.9842
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018987
(v2.0)		Sdc120969
820/4420.378524/4420.129162/4422.1228507/4421.5239376/4421.81481864/4421.4748
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018987
(v2.0)		Sdc120969
471/2040.6916266/2040.2655158/2043.1582468/2042.5146227/2042.18911086/2041.808
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018987
(v2.0)		Sdc120969
58.142117134
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018987
(v2.0)		Sdc120969
15.924912312.95
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018447
(v1.0)		328C0101C01-3Mm.2580Sdc120969
Sdc13.45463.35653.23833.26713.20543.25173.2714
MOE430 N/A
Agilent44K N/A
Proteome N/A