DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2004781
GeneClock
SynonymsbHLHe8
KAT13D
Descriptioncircadian locomotor output cycles kaput
LocusNM_007715 UCSC: chr5:76638893-76733573(-) OLP: chr5:76638893-76733573(-)
NM_001289826 UCSC: chr5:76638893-76733817(-) OLP: chr5:76638893-76733817(-)
DB links


Entrez 12753
MGI 99698
Ensembl ENSMUSG00000029238
Featureprotein-coding
GO_BP
  •   22 Terms
      DNA damage checkpoint (GO:0000077)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      transcription from RNA polymerase II promoter (GO:0006366)
      cellular response to DNA damage stimulus (GO:0006974)
      signal transduction (GO:0007165)
      spermatogenesis (GO:0007283)
      circadian rhythm (GO:0007623)
      histone acetylation (GO:0016573)
      circadian regulation of gene expression (GO:0032922)
      regulation of hair cycle (GO:0042634)
      proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161)
      negative regulation of transcription, DNA-templated (GO:0045892)
      positive regulation of transcription, DNA-templated (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      rhythmic process (GO:0048511)
      regulation of insulin secretion (GO:0050796)
      positive regulation of NF-kappaB transcription factor activity (GO:0051092)
      response to redox state (GO:0051775)
      cellular response to ionizing radiation (GO:0071479)
      regulation of type B pancreatic cell development (GO:2000074)
      negative regulation of glucocorticoid receptor signaling pathway (GO:2000323)
GO_MF
  •   17 Terms
      RNA polymerase II core promoter proximal region sequence-specific DNA binding (GO:0000978)
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity (GO:0000982)
      core promoter binding (GO:0001047)
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (GO:0001077)
      RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription (GO:0001190)
      DNA binding (GO:0003677)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      histone acetyltransferase activity (GO:0004402)
      signal transducer activity (GO:0004871)
      protein binding (GO:0005515)
      transcription factor binding (GO:0008134)
      transferase activity (GO:0016740)
      transferase activity, transferring acyl groups (GO:0016746)
      chromatin DNA binding (GO:0031490)
      sequence-specific DNA binding (GO:0043565)
      protein dimerization activity (GO:0046983)
      E-box binding (GO:0070888)
GO_CC
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004781
(v2.0)		ClockNM_001289826,NM_00771512753
3.9826926.45150.052634.893410.27425.3863515.565446.897412.11423.99878
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2004781
(v2.0)		Clock12753
756/3200.7257506/3200.5435163/3202.583309/3201.2742126/3200.7059664/3200.4525
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2004781
(v2.0)		Clock12753
477/1301.3559273/1300.9489160/1303.7809288/1302.456221/130-0.5506184/130-0.0974
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2004781
(v2.0)		Clock12753
42.954213232.54
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2004781
(v2.0)		Clock12753
11.03799911.15
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004860
(v1.0)		5727H3006H10-3Mm.3552Clock12753
U026318NAP097778-001Clock;TC800730O087853.08773.1212.82122.58051.90232.15462.0558
MOE430 N/A
Agilent44K N/A
Proteome N/A